Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FGKAn22_RS10730 Genome accession   NZ_AP019536
Coordinates   2211721..2213061 (-) Length   446 a.a.
NCBI ID   WP_212785632.1    Uniprot ID   A0AAN1T1B7
Organism   Ferrigenium kumadai strain An22     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2206721..2218061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGKAn22_RS10715 (FGKAn22_20810) - 2206860..2207990 (-) 1131 WP_212785630.1 ribonucleotide-diphosphate reductase subunit beta -
  FGKAn22_RS10720 (FGKAn22_20820) - 2208184..2211036 (-) 2853 WP_212785631.1 ribonucleoside-diphosphate reductase subunit alpha -
  FGKAn22_RS10725 (FGKAn22_20830) ampD 2211192..2211731 (-) 540 WP_212787215.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FGKAn22_RS10730 (FGKAn22_20840) pilR 2211721..2213061 (-) 1341 WP_212785632.1 sigma-54 dependent transcriptional regulator Regulator
  FGKAn22_RS10735 (FGKAn22_20850) - 2213051..2214646 (-) 1596 WP_212785633.1 ATP-binding protein -
  FGKAn22_RS10740 (FGKAn22_20860) - 2214674..2214886 (-) 213 WP_212785634.1 PP0621 family protein -
  FGKAn22_RS10745 (FGKAn22_20870) - 2215056..2215547 (+) 492 WP_212785635.1 Mut7-C RNAse domain-containing protein -
  FGKAn22_RS10750 (FGKAn22_20880) - 2215583..2216623 (-) 1041 WP_212785636.1 SRPBCC domain-containing protein -
  FGKAn22_RS12605 (FGKAn22_20890) - 2216845..2217459 (-) 615 WP_281411873.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48808.91 Da        Isoelectric Point: 6.1961

>NTDB_id=72680 FGKAn22_RS10730 WP_212785632.1 2211721..2213061(-) (pilR) [Ferrigenium kumadai strain An22]
MADKRACVLLVDDEPDILELLDLALSKMGLEVERAANVREALAKLASRRYDLCLTDMRMPDGDGLQVVQHIAQHNLDVPV
AVITAHGNMENAVNALKAGAFDYLAKPVSLDQLRALVKSALNLPQAASAHGKGLLGASPAMQKVRDLIGRVARSQAPVHI
SGESGSGKELAARLIVQSGARRDQPMIAVNCGAIPESLMESEFFGYRKGAFTGADKDRDGFFQAAHGGTLFLDEVADLPL
TMQVKLLRAIQEKHVRKVGATTEEAVDVRIISATHRDLAELVRQGKFRQDLYYRLNVIQIQMPPLRELREDIAAIAQQTL
NRLRGESAAEFSEEALQALQGYDFPGNVRELENVIERALALCSGDVITTQDLQLSPGEHQQGGHAVLGEKCPLPDYLDRV
EKQALLEALQQTGFNRTAAAKLLGLTFRTMRYRMERLGIKAPNDAD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=72680 FGKAn22_RS10730 WP_212785632.1 2211721..2213061(-) (pilR) [Ferrigenium kumadai strain An22]
ATGGCGGATAAGAGAGCCTGTGTGCTGCTGGTGGATGATGAGCCCGATATTCTCGAGCTGCTGGATCTGGCGCTGAGCAA
GATGGGGCTTGAAGTGGAACGGGCCGCCAACGTGCGCGAGGCGCTGGCGAAGCTGGCATCTCGCCGCTACGACTTGTGTC
TGACCGATATGCGCATGCCGGACGGGGATGGCCTGCAGGTGGTACAGCATATCGCCCAGCACAACCTGGATGTGCCTGTG
GCAGTGATCACAGCCCATGGCAACATGGAAAACGCTGTTAATGCGCTCAAGGCGGGGGCGTTCGATTACCTGGCTAAGCC
GGTTTCGCTGGACCAGTTGCGCGCCCTGGTGAAATCGGCGCTGAATCTGCCGCAGGCGGCTTCGGCGCATGGCAAGGGCT
TGCTGGGTGCGTCCCCGGCGATGCAGAAGGTGCGCGACCTGATCGGGCGCGTGGCGCGCAGCCAGGCGCCGGTGCACATC
AGTGGCGAGTCGGGCAGCGGCAAGGAGCTGGCGGCTCGGCTGATCGTGCAAAGCGGGGCGCGGCGCGACCAGCCGATGAT
CGCGGTAAACTGTGGCGCGATCCCGGAGAGCCTGATGGAAAGCGAATTCTTCGGTTACAGGAAGGGTGCATTCACCGGTG
CAGACAAGGACCGGGACGGCTTCTTCCAGGCGGCGCATGGCGGCACCCTGTTCCTTGATGAGGTGGCTGACCTGCCGCTG
ACCATGCAGGTCAAGCTGCTGCGTGCGATACAGGAAAAACACGTGCGCAAGGTGGGCGCGACGACCGAAGAGGCTGTGGA
TGTGCGCATCATCAGCGCGACCCATCGCGATCTCGCCGAACTGGTGCGCCAAGGCAAGTTCCGCCAGGATCTGTATTATC
GCCTGAACGTGATCCAGATCCAGATGCCGCCGCTGCGCGAATTGCGCGAGGACATCGCCGCCATCGCGCAGCAGACCCTC
AATCGTTTGCGTGGCGAATCTGCAGCGGAGTTTTCCGAAGAAGCGTTGCAAGCACTGCAAGGGTATGACTTCCCCGGTAA
CGTGCGTGAGCTGGAGAATGTCATCGAGCGCGCCCTGGCGCTGTGTTCGGGCGATGTGATCACGACGCAGGATTTGCAAC
TTTCGCCGGGCGAACATCAGCAGGGCGGCCACGCGGTGCTTGGGGAAAAATGCCCACTGCCGGATTACCTGGACCGGGTC
GAGAAGCAGGCCTTGCTGGAAGCGTTGCAGCAGACCGGCTTCAACCGCACGGCGGCGGCGAAGCTGCTGGGGCTGACATT
CCGGACCATGCGCTACCGCATGGAGCGATTAGGTATCAAGGCGCCGAATGATGCGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(397-436)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.691

99.327

0.583
  pilR Acinetobacter baumannii strain A118

45.376

100

0.473
  luxO Vibrio cholerae strain A1552

37.054

100

0.372

Multiple sequence alignment