Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGKAn22_RS09400 Genome accession   NZ_AP019536
Coordinates   1961302..1961757 (-) Length   151 a.a.
NCBI ID   WP_212785390.1    Uniprot ID   A0AAN1T1W5
Organism   Ferrigenium kumadai strain An22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1956302..1966757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGKAn22_RS09390 (FGKAn22_18300) - 1959499..1960110 (+) 612 WP_212785388.1 sigma factor -
  FGKAn22_RS09395 (FGKAn22_18310) - 1960140..1961231 (+) 1092 WP_212785389.1 sensor domain-containing diguanylate cyclase -
  FGKAn22_RS09400 (FGKAn22_18320) ssb 1961302..1961757 (-) 456 WP_212785390.1 single-stranded DNA-binding protein Machinery gene
  FGKAn22_RS09405 (FGKAn22_18330) - 1961759..1963114 (-) 1356 WP_212785391.1 MFS transporter -
  FGKAn22_RS09410 (FGKAn22_18340) uvrA 1963302..1966121 (+) 2820 WP_212785392.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16858.80 Da        Isoelectric Point: 7.0193

>NTDB_id=72679 FGKAn22_RS09400 WP_212785390.1 1961302..1961757(-) (ssb) [Ferrigenium kumadai strain An22]
MSVNKVILVGRLGKDPETRYMTNGEAVTNATLATSENWKDKSGEKQEKTEWHNLVFYRRLAEVAGEYLKKGSQVYIEGKI
QTRKWQTKEGQDRYTTEIIVNEMQMLGGKSTGGSSFEVVENQSAPSRSAAPARSAPAAKSSFDNFDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=72679 FGKAn22_RS09400 WP_212785390.1 1961302..1961757(-) (ssb) [Ferrigenium kumadai strain An22]
ATGTCGGTGAACAAGGTGATTCTGGTGGGGCGTCTGGGCAAGGACCCGGAGACGCGTTACATGACCAACGGCGAGGCGGT
GACCAACGCCACGCTGGCGACTTCCGAGAACTGGAAGGACAAGAGCGGCGAGAAGCAGGAAAAGACGGAATGGCACAACC
TGGTGTTCTATCGCCGCTTGGCTGAAGTCGCGGGCGAATACCTGAAGAAGGGTTCGCAGGTCTACATCGAAGGCAAGATC
CAGACCCGCAAGTGGCAGACCAAGGAAGGCCAGGACCGCTACACCACCGAGATCATCGTCAATGAGATGCAGATGCTGGG
CGGCAAGTCCACCGGCGGCAGCAGCTTCGAAGTGGTGGAGAACCAGTCCGCACCGTCGCGTTCCGCCGCGCCTGCGAGAT
CCGCCCCTGCCGCAAAGAGCAGCTTCGACAACTTCGACGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.744

100

0.589
  ssb Glaesserella parasuis strain SC1401

49.153

100

0.576
  ssb Neisseria meningitidis MC58

50

100

0.576
  ssb Neisseria gonorrhoeae MS11

49.425

100

0.57

Multiple sequence alignment