Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NYP54_RS07065 Genome accession   NZ_CP103983
Coordinates   1616821..1617342 (+) Length   173 a.a.
NCBI ID   WP_283155915.1    Uniprot ID   -
Organism   Cysteiniphilum sp. QT6929     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1611821..1622342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYP54_RS07040 (NYP54_07040) - 1611926..1612837 (+) 912 WP_283155911.1 Dyp-type peroxidase -
  NYP54_RS07045 (NYP54_07045) rimI 1612824..1613270 (-) 447 WP_283155912.1 ribosomal protein S18-alanine N-acetyltransferase -
  NYP54_RS07050 (NYP54_07050) - 1613260..1614741 (-) 1482 WP_283155913.1 RimK family protein -
  NYP54_RS07055 (NYP54_07055) - 1614779..1616038 (-) 1260 WP_283155914.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  NYP54_RS07060 (NYP54_07060) - 1616042..1616554 (-) 513 WP_117003111.1 hypothetical protein -
  NYP54_RS07065 (NYP54_07065) ssb 1616821..1617342 (+) 522 WP_283155915.1 single-stranded DNA-binding protein Machinery gene
  NYP54_RS07070 (NYP54_07070) - 1617360..1617962 (+) 603 WP_283155916.1 M15 family metallopeptidase -
  NYP54_RS07075 (NYP54_07075) - 1617979..1618707 (+) 729 WP_117003108.1 ester cyclase -
  NYP54_RS07080 (NYP54_07080) - 1618708..1619463 (-) 756 WP_283155917.1 class I SAM-dependent methyltransferase -
  NYP54_RS07085 (NYP54_07085) - 1619658..1621055 (-) 1398 WP_283155918.1 MFS transporter -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19182.16 Da        Isoelectric Point: 4.9265

>NTDB_id=726770 NYP54_RS07065 WP_283155915.1 1616821..1617342(+) (ssb) [Cysteiniphilum sp. QT6929]
MAKGTVNKVILLGRLGADPEVRYMPSGMSVANLRLATNDGYKDRQTGQFVENTEWHRVVVFGKQAETVAQYTQKGSLLYI
EGRIRTNKWQDQNGQERYTTEIVATEMQLMGGRNDGQNGGSPQQGYSQPQFNQPSAQPQAAAGAYNQAPQQAKPQAQPDL
SQLNDFDDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=726770 NYP54_RS07065 WP_283155915.1 1616821..1617342(+) (ssb) [Cysteiniphilum sp. QT6929]
ATGGCTAAGGGTACAGTAAATAAGGTGATTTTGCTTGGACGATTGGGTGCAGATCCTGAGGTGCGCTATATGCCAAGTGG
TATGTCGGTGGCGAACTTGCGATTAGCAACCAATGATGGCTATAAAGATCGTCAAACTGGACAGTTTGTTGAAAATACAG
AATGGCATCGTGTTGTTGTATTTGGTAAGCAAGCTGAGACGGTTGCGCAATATACGCAAAAAGGATCGTTGCTATATATT
GAAGGGCGTATTCGCACTAATAAATGGCAAGATCAAAATGGTCAAGAGCGCTATACAACCGAGATTGTTGCTACTGAAAT
GCAGTTAATGGGCGGGCGCAATGATGGGCAAAATGGAGGCAGTCCTCAGCAAGGCTATTCGCAACCGCAATTTAACCAAC
CATCCGCGCAACCACAAGCTGCAGCAGGTGCATACAATCAGGCACCACAGCAAGCCAAGCCTCAAGCGCAGCCAGATTTA
AGTCAGCTTAATGACTTTGATGATGACGATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.556

100

0.526
  ssb Neisseria meningitidis MC58

46.286

100

0.468
  ssb Neisseria gonorrhoeae MS11

46.286

100

0.468
  ssb Glaesserella parasuis strain SC1401

44.693

100

0.462