Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NYP20_RS26190 Genome accession   NZ_CP103965
Coordinates   5944249..5944779 (-) Length   176 a.a.
NCBI ID   WP_259496953.1    Uniprot ID   -
Organism   Pseudomonas sp. N3-W     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5939249..5949779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYP20_RS26160 (NYP20_26160) - 5939587..5940276 (+) 690 WP_409077907.1 YjfI family protein -
  NYP20_RS26165 (NYP20_26165) - 5940299..5940997 (+) 699 WP_259496948.1 PspA/IM30 family protein -
  NYP20_RS26170 (NYP20_26170) - 5941157..5941807 (+) 651 WP_259496949.1 YjfK family protein -
  NYP20_RS26175 (NYP20_26175) - 5941824..5942252 (+) 429 WP_259496950.1 DUF350 domain-containing protein -
  NYP20_RS26180 (NYP20_26180) - 5942272..5943000 (+) 729 WP_259496951.1 DUF1190 domain-containing protein -
  NYP20_RS26185 (NYP20_26185) - 5943013..5944170 (+) 1158 WP_259496952.1 glutathionylspermidine synthase family protein -
  NYP20_RS26190 (NYP20_26190) ssb 5944249..5944779 (-) 531 WP_259496953.1 single-stranded DNA-binding protein Machinery gene
  NYP20_RS26195 (NYP20_26195) - 5944789..5946186 (-) 1398 WP_259496955.1 MFS transporter -
  NYP20_RS26200 (NYP20_26200) uvrA 5946378..5949212 (+) 2835 WP_259496956.1 excinuclease ABC subunit UvrA -
  NYP20_RS26205 (NYP20_26205) bfr 5949276..5949740 (-) 465 WP_259496958.1 bacterioferritin -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19528.68 Da        Isoelectric Point: 5.9314

>NTDB_id=726684 NYP20_RS26190 WP_259496953.1 5944249..5944779(-) (ssb) [Pseudomonas sp. N3-W]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQAGGNNYQQSAPRQQAPRPQQSAPQQSAPQQSRPAPQQAA
PQPAPDFDSFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=726684 NYP20_RS26190 WP_259496953.1 5944249..5944779(-) (ssb) [Pseudomonas sp. N3-W]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACTGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAAGTGGCCGAAATTGCTGGCGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGTTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGCAGGGCGACCAACAAGCCGGTGGCAACAACTACCAGCAGTCGGCGCCACGTC
AGCAAGCTCCGCGTCCGCAGCAGTCGGCACCGCAACAGTCCGCGCCACAGCAGTCGCGCCCGGCTCCTCAGCAAGCCGCA
CCGCAACCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.669

100

0.614
  ssb Glaesserella parasuis strain SC1401

48.925

100

0.517
  ssb Neisseria meningitidis MC58

47.541

100

0.494
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.472