Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NYO66_RS05060 Genome accession   NZ_CP103962
Coordinates   1053124..1053633 (-) Length   169 a.a.
NCBI ID   WP_009364346.1    Uniprot ID   -
Organism   Brucella sp. 2716     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1048124..1058633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYO66_RS05045 (NYO66_05045) - 1050759..1051388 (+) 630 WP_006070834.1 MarC family protein -
  NYO66_RS05050 (NYO66_05050) phnN 1051479..1052057 (-) 579 WP_259594442.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN -
  NYO66_RS05055 (NYO66_05055) phnF 1052244..1053005 (+) 762 WP_259594443.1 phosphonate metabolism transcriptional regulator PhnF -
  NYO66_RS05060 (NYO66_05060) ssb 1053124..1053633 (-) 510 WP_009364346.1 single-stranded DNA-binding protein Machinery gene
  NYO66_RS05065 (NYO66_05065) - 1053746..1053991 (+) 246 WP_259594444.1 hypothetical protein -
  NYO66_RS05070 (NYO66_05070) - 1054201..1054401 (+) 201 WP_002964232.1 hypothetical protein -
  NYO66_RS05075 (NYO66_05075) uvrA 1054532..1057456 (+) 2925 WP_259594445.1 excinuclease ABC subunit UvrA -
  NYO66_RS05080 (NYO66_05080) - 1057640..1057915 (-) 276 WP_002964234.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18428.21 Da        Isoelectric Point: 5.3476

>NTDB_id=726624 NYO66_RS05060 WP_009364346.1 1053124..1053633(-) (ssb) [Brucella sp. 2716]
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGGSSGGFS
RDLDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=726624 NYO66_RS05060 WP_009364346.1 1053124..1053633(-) (ssb) [Brucella sp. 2716]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCTGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGGGACCGCCAGACCGGCGAACGCAAGGACCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAGAACGGCAATGACCGTTATTCAACGGAAATCGTGCTGCAAAAATT
CCGTGGAGAGCTTCAGATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGCCGTTCCTTCGGCGGTGGCGGCAATCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCGGCAGCAGCGGCGGTTTCTCG
CGCGATCTGGACGATGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.421

100

0.544
  ssb Vibrio cholerae strain A1552

48.555

100

0.497
  ssb Neisseria meningitidis MC58

39.106

100

0.414
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.402