Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PWR57_RS00955 Genome accession   NZ_CP119441
Coordinates   203942..204478 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli O121 strain 201805972     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 198942..209478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWR57_RS00935 (PWR57_00935) aphA 199231..199944 (+) 714 WP_001300837.1 acid phosphatase AphA -
  PWR57_RS00940 (PWR57_00940) yjbQ 200055..200471 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PWR57_RS00945 (PWR57_00945) yjbR 200475..200831 (+) 357 WP_000155655.1 MmcQ/YjbR family DNA-binding protein -
  PWR57_RS00950 (PWR57_00950) uvrA 200866..203688 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  PWR57_RS00955 (PWR57_00955) ssb 203942..204478 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PWR57_RS00960 (PWR57_00960) yjcB 204577..204858 (-) 282 WP_001295689.1 YjcB family protein -
  PWR57_RS00965 (PWR57_00965) pdeC 205288..205956 (+) 669 Protein_183 c-di-GMP phosphodiesterase PdeC -
  PWR57_RS00970 (PWR57_00970) - 205999..206696 (+) 698 WP_094096600.1 IS1-like element IS1A family transposase -
  PWR57_RS00975 (PWR57_00975) pdeC 206709..207650 (+) 942 Protein_185 c-di-GMP phosphodiesterase PdeC -
  PWR57_RS00980 (PWR57_00980) soxS 207653..207976 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  PWR57_RS00985 (PWR57_00985) soxR 208062..208526 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=726437 PWR57_RS00955 WP_000168305.1 203942..204478(+) (ssb) [Escherichia coli O121 strain 201805972]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=726437 PWR57_RS00955 WP_000168305.1 203942..204478(+) (ssb) [Escherichia coli O121 strain 201805972]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCTGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489