Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PKHYL_RS14665 Genome accession   NZ_AP019516
Coordinates   2751279..2752304 (-) Length   341 a.a.
NCBI ID   WP_240365479.1    Uniprot ID   A0A7U6KS94
Organism   Psychrobacter sp. KH172YL61     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2746279..2757304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PKHYL_RS14645 pilQ 2746963..2749337 (-) 2375 Protein_2967 type IV pilus secretin PilQ -
  PKHYL_RS14650 (PKHYL_35720) - 2749365..2749898 (-) 534 WP_058025948.1 pilus assembly protein PilP -
  PKHYL_RS18305 pilO 2749898..2750631 (-) 734 Protein_2969 type 4a pilus biogenesis protein PilO -
  PKHYL_RS18310 - 2750854..2751279 (-) 426 Protein_2970 PilN domain-containing protein -
  PKHYL_RS14665 (PKHYL_35750) comM 2751279..2752304 (-) 1026 WP_240365479.1 type IV pilus assembly protein PilM Machinery gene
  PKHYL_RS14670 (PKHYL_35770) - 2752512..2755173 (+) 2662 Protein_2972 PBP1A family penicillin-binding protein -
  PKHYL_RS14675 (PKHYL_35780) - 2755275..2755799 (-) 525 WP_071002926.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37048.15 Da        Isoelectric Point: 4.2064

>NTDB_id=72642 PKHYL_RS14665 WP_240365479.1 2751279..2752304(-) (comM) [Psychrobacter sp. KH172YL61]
MIGVDICATSVKIVDIQRQQGMFHLKSYGIERLPEGVVVDKLLVDTEAVGNIIASLARRCQVAGSNAATAVSGSAVITKI
IDMDMMLSDVEREAQIRLDADQYVPYPLEDVNLDFEVLGPSLVSEDMVQVLLAASRSENVDQRVDALAFGGMQTKVMDIE
SHAIERAFGLMADNLPNMPELVALVDIGHNQTTLYIAKNGEFIYSREQLFGGVQLTEAIQNRYGLSAEEATLSKRERTLP
DDYYPEVLTPFIENTIQQITRSLQFYFSSSQYSSIDHVVLAGGSSSIAGLAGMAQQKLGVSVSVANPFTNMTIAPNIDNE
QLTIDAPGLMAACGLALRSFD

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=72642 PKHYL_RS14665 WP_240365479.1 2751279..2752304(-) (comM) [Psychrobacter sp. KH172YL61]
TTGATTGGTGTGGATATTTGTGCCACTTCAGTAAAAATAGTGGACATACAGCGTCAACAAGGCATGTTCCACCTAAAATC
TTACGGTATTGAGAGACTACCAGAAGGTGTAGTCGTCGACAAACTCCTAGTTGATACAGAGGCGGTTGGCAACATTATAG
CGAGTCTAGCAAGACGTTGCCAAGTTGCGGGCAGTAATGCTGCAACCGCCGTATCAGGATCTGCCGTCATCACCAAAATT
ATTGATATGGATATGATGCTAAGCGATGTTGAGCGTGAAGCACAAATACGTTTGGATGCTGATCAATATGTGCCTTATCC
ATTAGAAGATGTCAATTTAGATTTTGAGGTGCTAGGTCCATCTTTAGTGAGTGAGGATATGGTACAAGTACTGCTTGCGG
CCTCTCGCTCAGAAAACGTTGATCAGCGTGTTGATGCGTTGGCCTTTGGTGGTATGCAAACCAAGGTTATGGATATCGAG
TCACATGCAATAGAGCGCGCTTTTGGACTGATGGCAGACAATCTGCCAAATATGCCAGAACTGGTCGCTTTGGTTGATAT
CGGCCATAATCAAACCACTTTATATATCGCAAAGAATGGTGAGTTTATTTATAGTCGCGAGCAATTGTTTGGCGGTGTTC
AGTTAACAGAAGCGATTCAAAACCGGTATGGGTTGTCAGCTGAAGAGGCAACGCTGAGCAAACGTGAGCGCACATTGCCT
GATGACTACTATCCTGAAGTTTTGACCCCTTTTATAGAAAATACCATTCAGCAAATCACTCGTTCCTTACAATTTTACTT
CTCCTCAAGTCAGTATAGTAGTATTGACCACGTGGTACTTGCGGGTGGTAGTAGCTCCATTGCAGGTCTTGCTGGGATGG
CACAACAAAAACTCGGTGTAAGCGTTAGTGTTGCCAATCCGTTTACCAATATGACCATTGCGCCTAATATCGATAATGAG
CAATTGACCATTGACGCGCCAGGATTAATGGCTGCATGCGGTCTTGCGTTAAGGAGCTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(3-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U6KS94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.733

100

0.507
  pilM Acinetobacter baumannii D1279779

50.147

100

0.501
  comM Acinetobacter baylyi ADP1

48.547

100

0.49
  pilM Legionella pneumophila strain ERS1305867

41.108

100

0.413

Multiple sequence alignment