Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   P1T45_RS07885 Genome accession   NZ_CP119427
Coordinates   1462005..1462940 (-) Length   311 a.a.
NCBI ID   WP_003108202.1    Uniprot ID   A0ABP2SZA3
Organism   Streptococcus parauberis strain KSP45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1457005..1467940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS07865 (P1T45_07870) - 1457329..1457979 (-) 651 WP_003108204.1 HAD family hydrolase -
  P1T45_RS07870 (P1T45_07875) - 1457993..1459234 (-) 1242 WP_003107259.1 OFA family MFS transporter -
  P1T45_RS07875 (P1T45_07880) - 1459368..1460006 (-) 639 WP_003107261.1 HAD family phosphatase -
  P1T45_RS07880 (P1T45_07885) pepF 1460177..1461979 (-) 1803 WP_003108203.1 oligoendopeptidase F Regulator
  P1T45_RS07885 (P1T45_07890) coiA 1462005..1462940 (-) 936 WP_003108202.1 competence protein CoiA Machinery gene
  P1T45_RS07890 (P1T45_07895) - 1463010..1464153 (-) 1144 Protein_1510 MFS transporter -
  P1T45_RS07895 (P1T45_07900) - 1464253..1464969 (-) 717 WP_003107266.1 pseudouridine synthase -
  P1T45_RS07900 (P1T45_07905) nagB 1465047..1465751 (-) 705 WP_003104983.1 glucosamine-6-phosphate deaminase -
  P1T45_RS07905 (P1T45_07910) queA 1465943..1466971 (+) 1029 WP_003108200.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 36540.66 Da        Isoelectric Point: 8.7673

>NTDB_id=726392 P1T45_RS07885 WP_003108202.1 1462005..1462940(-) (coiA) [Streptococcus parauberis strain KSP45]
MLVAIDDLGNRLTTLDNLPKTGIYYCPVCKGQVTLKRGKVKQAHFAHKNLLNCPNSSLNESTEHLLLKAKLYQNLKKSEE
VTIETFFPSINQIADLQVNHKLVLEVQCSSLPPDRLVERTKNYRDNDQFIIWLLGKNLWIKHKLSYLQKQFLSFSWSIGF
YLWEIDLEKNCLRLCYMIHEDLMGKVTCLTRTCPLDGNLMSFFRMPFQKMNLEPIKVKSDSHLLQKIQKALKYRNKYWML
RQEKAYQMGINLLCLSVEDFYPQYNPPKCEQGFCLIESDLKPFYDAFEAYNKEISNKDVQTLHPPSFYVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=726392 P1T45_RS07885 WP_003108202.1 1462005..1462940(-) (coiA) [Streptococcus parauberis strain KSP45]
ATGTTAGTTGCAATTGATGATTTGGGGAATCGGCTCACCACCTTAGATAATTTACCCAAAACAGGTATCTATTACTGTCC
AGTATGTAAAGGTCAAGTCACTTTAAAGAGAGGAAAAGTGAAACAAGCACATTTTGCTCATAAGAATTTATTAAATTGTC
CTAACAGCTCACTTAACGAATCAACGGAACATTTATTACTCAAGGCTAAACTCTACCAGAATCTTAAAAAGAGTGAAGAA
GTGACGATTGAAACCTTTTTTCCAAGTATAAATCAAATTGCTGATTTACAAGTCAATCATAAATTAGTATTAGAAGTCCA
GTGTAGTTCATTACCTCCAGATAGATTAGTGGAACGAACAAAAAATTATAGAGACAATGACCAATTCATTATCTGGTTAT
TAGGTAAGAATCTATGGATAAAGCATAAATTAAGTTATCTTCAAAAACAATTCTTATCATTTTCTTGGTCGATAGGCTTC
TATCTCTGGGAAATTGATCTAGAAAAAAATTGCCTAAGACTCTGCTATATGATTCATGAGGATTTAATGGGGAAGGTAAC
TTGTTTAACTAGAACTTGTCCTCTGGATGGGAACCTTATGTCATTTTTTAGAATGCCATTTCAAAAAATGAATCTAGAAC
CTATCAAGGTAAAAAGCGATAGCCATCTTCTGCAAAAAATTCAAAAAGCTTTGAAATATCGGAATAAGTATTGGATGCTT
AGGCAGGAAAAAGCCTATCAAATGGGAATTAATCTTTTATGTTTGTCGGTTGAGGATTTTTATCCGCAATATAATCCACC
TAAGTGTGAGCAAGGATTCTGTTTAATTGAGTCGGATTTAAAACCTTTTTATGATGCATTTGAGGCATATAATAAAGAAA
TTTCTAATAAAGACGTGCAAACGCTTCACCCTCCTAGCTTTTATGTTAAAATATGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(22-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

43.366

99.357

0.431
  coiA Streptococcus pneumoniae TIGR4

40.129

99.357

0.399
  coiA Streptococcus pneumoniae Rx1

40.129

99.357

0.399
  coiA Streptococcus pneumoniae D39

40.129

99.357

0.399
  coiA Streptococcus pneumoniae R6

40.129

99.357

0.399
  coiA Lactococcus lactis subsp. cremoris KW2

36.957

100

0.383