Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PKHYL_RS03315 Genome accession   NZ_AP019516
Coordinates   650810..651424 (+) Length   204 a.a.
NCBI ID   WP_071002203.1    Uniprot ID   -
Organism   Psychrobacter sp. KH172YL61     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 645810..656424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PKHYL_RS03310 (PKHYL_07880) - 649361..650724 (+) 1364 Protein_657 MFS transporter -
  PKHYL_RS03315 (PKHYL_07900) ssb 650810..651424 (+) 615 WP_071002203.1 single-stranded DNA-binding protein Machinery gene
  PKHYL_RS03320 (PKHYL_07910) - 651993..652985 (+) 993 WP_240365287.1 IS30 family transposase -
  PKHYL_RS03325 (PKHYL_07920) - 653301..653975 (+) 675 WP_071002202.1 hypothetical protein -
  PKHYL_RS03330 (PKHYL_07930) - 654051..654338 (+) 288 WP_240365972.1 BLUF domain-containing protein -
  PKHYL_RS03335 (PKHYL_07940) - 654380..654568 (+) 189 WP_240365973.1 hypothetical protein -
  PKHYL_RS03340 (PKHYL_07960) - 654665..655062 (+) 398 Protein_663 BLUF domain-containing protein -
  PKHYL_RS03345 (PKHYL_07970) - 655517..655840 (+) 324 WP_071002199.1 H-NS histone family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22179.87 Da        Isoelectric Point: 5.9191

>NTDB_id=72638 PKHYL_RS03315 WP_071002203.1 650810..651424(+) (ssb) [Psychrobacter sp. KH172YL61]
MRGVNKVIIIGNLGADPEARQFNNGGSVTNISVATSEQWTDKQSGEKREATEWHRISLFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDQNGQDRYITEIRAEQMQMLDGMSGGQSDNGGFSNNQGGQNSNSYGNQGGQSNQNNFGQQAGGQPAQRGGYN
NQPSGGQNSFNNQNAPAPQNQFNQPAQSKPTAMSDGPVDDDIPF

Nucleotide


Download         Length: 615 bp        

>NTDB_id=72638 PKHYL_RS03315 WP_071002203.1 650810..651424(+) (ssb) [Psychrobacter sp. KH172YL61]
ATGCGCGGAGTTAATAAAGTTATCATCATCGGTAACCTTGGAGCAGATCCTGAGGCACGCCAGTTCAATAATGGCGGTAG
CGTGACTAATATCTCGGTTGCGACATCTGAGCAGTGGACGGATAAACAAAGCGGTGAAAAAAGAGAAGCGACAGAGTGGC
ATCGTATCTCACTGTTTAATCGTTTGGGTGAAATCGCTGCACAGTATCTGCGTAAAGGCAGCAAGGTCTATATTGAAGGT
AGCTTGCGTACGCGTAAGTACCAAGACCAGAACGGTCAAGATCGTTATATTACGGAGATTCGAGCTGAGCAAATGCAGAT
GCTTGATGGTATGAGTGGTGGCCAAAGCGATAATGGAGGCTTTAGTAACAATCAAGGTGGCCAGAACTCAAACAGTTACG
GCAACCAAGGCGGTCAAAGCAACCAAAATAATTTCGGTCAGCAAGCAGGTGGCCAGCCAGCACAGCGAGGCGGCTACAAT
AACCAACCGAGTGGCGGTCAGAACAGCTTTAATAACCAAAATGCACCTGCGCCGCAAAATCAGTTTAATCAACCCGCGCA
ATCTAAGCCTACGGCAATGTCAGATGGCCCTGTAGACGATGATATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.208

100

0.52
  ssb Vibrio cholerae strain A1552

45.588

100

0.456
  ssb Neisseria meningitidis MC58

40.394

99.51

0.402
  ssb Neisseria gonorrhoeae MS11

40.394

99.51

0.402

Multiple sequence alignment