Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR19_RS11625 Genome accession   NZ_CP103874
Coordinates   2469875..2470204 (+) Length   109 a.a.
NCBI ID   WP_013746361.1    Uniprot ID   F4HBV2
Organism   Gallibacterium anatis strain TH22     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2464875..2475204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR19_RS11610 (NYR19_11620) galU 2465691..2466578 (+) 888 WP_302508386.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NYR19_RS11615 (NYR19_11625) glpT 2466937..2468394 (+) 1458 WP_210641015.1 glycerol-3-phosphate transporter -
  NYR19_RS11620 (NYR19_11630) glpQ 2468586..2469680 (+) 1095 WP_302508389.1 glycerophosphodiester phosphodiesterase -
  NYR19_RS11625 (NYR19_11635) comEA/comE1 2469875..2470204 (+) 330 WP_013746361.1 helix-hairpin-helix domain-containing protein Machinery gene
  NYR19_RS11630 (NYR19_11640) fis 2470286..2470582 (-) 297 WP_013746362.1 DNA-binding transcriptional regulator Fis -
  NYR19_RS11635 (NYR19_11645) dusB 2470611..2471585 (-) 975 WP_039086547.1 tRNA dihydrouridine synthase DusB -
  NYR19_RS11640 (NYR19_11650) - 2471912..2474953 (+) 3042 WP_302508393.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11558.21 Da        Isoelectric Point: 7.2030

>NTDB_id=726329 NYR19_RS11625 WP_013746361.1 2469875..2470204(+) (comEA/comE1) [Gallibacterium anatis strain TH22]
MKLKHLFALTFGSLALLSGSVAVAESANPPPATETAQLQQAAQSDKVNLNTATAEQLQKGLVGIGAKKAQAIVEYREQHG
PFVSVEQITEVKGIGSAIFEKNKDRLAIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=726329 NYR19_RS11625 WP_013746361.1 2469875..2470204(+) (comEA/comE1) [Gallibacterium anatis strain TH22]
ATGAAATTAAAACATTTATTTGCGTTAACTTTCGGTTCACTAGCACTGTTGTCCGGTTCGGTTGCGGTAGCGGAAAGCGC
CAATCCGCCGCCGGCAACTGAAACGGCACAACTCCAACAGGCGGCACAGAGCGATAAAGTGAATTTAAATACTGCCACTG
CTGAACAGTTACAGAAAGGATTGGTCGGTATTGGTGCGAAAAAGGCACAGGCGATTGTCGAGTATCGTGAGCAGCACGGG
CCGTTTGTTTCTGTGGAACAGATTACCGAAGTAAAAGGAATCGGTTCAGCTATTTTTGAAAAAAATAAAGATCGTCTAGC
GATTGAATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4HBV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

48.649

100

0.495
  comE1/comEA Haemophilus influenzae Rd KW20

48.182

100

0.486
  comEA Acinetobacter baylyi ADP1

39.535

100

0.468
  comEA Bacillus subtilis subsp. subtilis str. 168

46.067

81.651

0.376