Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NYR19_RS02115 Genome accession   NZ_CP103874
Coordinates   441695..442762 (+) Length   355 a.a.
NCBI ID   WP_013745832.1    Uniprot ID   F4HFK5
Organism   Gallibacterium anatis strain TH22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 436695..447762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR19_RS02095 (NYR19_02095) - 436796..437185 (-) 390 WP_018345719.1 RidA family protein -
  NYR19_RS02100 (NYR19_02100) - 437178..437846 (-) 669 WP_302508687.1 HAD family phosphatase -
  NYR19_RS02105 (NYR19_02105) argF 437872..438873 (-) 1002 WP_039081249.1 ornithine carbamoyltransferase -
  NYR19_RS02110 (NYR19_02110) mutS 438901..441486 (-) 2586 WP_302508688.1 DNA mismatch repair protein MutS -
  NYR19_RS02115 (NYR19_02115) recA 441695..442762 (+) 1068 WP_013745832.1 recombinase RecA Machinery gene
  NYR19_RS02120 (NYR19_02120) recX 442921..443364 (+) 444 WP_013745831.1 recombination regulator RecX -
  NYR19_RS02125 (NYR19_02125) djlA 443448..444320 (+) 873 WP_013745830.1 co-chaperone DjlA -
  NYR19_RS02130 (NYR19_02130) dusC 444327..445271 (+) 945 WP_039081246.1 tRNA dihydrouridine(16) synthase DusC -
  NYR19_RS02135 (NYR19_02135) yjjG 445261..445938 (+) 678 WP_302508689.1 pyrimidine 5'-nucleotidase -
  NYR19_RS02140 (NYR19_02140) - 446626..447597 (+) 972 WP_285099437.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38335.66 Da        Isoelectric Point: 4.7539

>NTDB_id=726317 NYR19_RS02115 WP_013745832.1 441695..442762(+) (recA) [Gallibacterium anatis strain TH22]
MTTNNEDKERALAAALGQIEKQFGKGSIMRLGDTQTLDVEAVSTGSLALDVALGIGGLPMGRIVEIFGPESSGKTTLTLS
VIAQAQKEGKTCAFIDAEHALDPIYASKLGVDVQSLLVSQPDNGEQALEICDALVRSGAVDVIIIDSVAALTPKAEIEGD
MGDSHMGLQARLMSQALRKLTGHIKTANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSITDGDEVI
GNETRVKVVKNKVAAPFRQAEFQILYGEGISKNGELIELGVKHKLLNKSGAWYSYNDEKIGQGRTNAMKWLAEHPEVAAE
LERKLREELLSNPEQLLVADDTEKQPEDDALNFGE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=726317 NYR19_RS02115 WP_013745832.1 441695..442762(+) (recA) [Gallibacterium anatis strain TH22]
ATGACAACAAACAATGAAGATAAAGAAAGAGCATTGGCGGCAGCATTAGGGCAAATTGAAAAACAATTCGGTAAAGGTTC
AATTATGCGCCTTGGTGATACACAAACATTGGATGTGGAAGCGGTTTCTACCGGTTCATTGGCATTAGATGTGGCGTTAG
GTATCGGTGGTTTGCCAATGGGGCGAATCGTTGAGATTTTTGGGCCTGAATCTTCCGGTAAAACCACATTAACTTTATCT
GTGATTGCGCAAGCACAAAAAGAGGGCAAAACCTGTGCCTTTATTGATGCGGAACACGCATTGGATCCTATTTATGCTTC
TAAATTAGGGGTTGATGTACAATCACTTTTAGTTTCGCAACCGGATAACGGCGAACAGGCGTTGGAAATTTGTGATGCTT
TAGTACGTTCCGGAGCGGTGGATGTCATTATCATTGACTCTGTAGCAGCATTAACACCGAAAGCGGAAATTGAAGGTGAT
ATGGGTGATTCTCATATGGGGTTACAGGCACGTTTAATGTCGCAGGCATTGCGTAAACTTACCGGTCATATCAAAACTGC
AAACTGTTTAGTGGTGTTTATTAACCAAATTCGTATGAAAATTGGGGTTATGTTTGGTAATCCTGAAACCACAACCGGTG
GTAATGCATTAAAATTCTATGCTTCAGTGCGTTTAGATATTCGCCGCACTGGCTCAATTACTGATGGCGATGAAGTAATT
GGTAACGAAACCAGAGTTAAAGTGGTGAAAAATAAAGTTGCCGCGCCATTTAGACAAGCAGAATTCCAAATTCTTTACGG
AGAAGGTATTTCGAAAAACGGTGAATTAATCGAATTGGGCGTGAAACATAAATTGCTTAATAAATCAGGCGCTTGGTATT
CCTACAATGATGAAAAGATTGGTCAAGGTCGTACCAATGCAATGAAGTGGCTTGCCGAACATCCGGAGGTGGCTGCCGAG
TTGGAACGTAAATTACGTGAAGAGTTGCTTTCCAATCCGGAGCAGTTATTAGTTGCGGATGATACAGAAAAACAACCGGA
AGATGACGCATTAAATTTCGGTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4HFK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

74.286

98.592

0.732
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.286

98.592

0.732
  recA Glaesserella parasuis strain SC1401

74.286

98.592

0.732
  recA Pseudomonas stutzeri DSM 10701

73.824

95.775

0.707
  recA Acinetobacter baylyi ADP1

69.186

96.901

0.67
  recA Neisseria gonorrhoeae MS11

73.684

90.986

0.67
  recA Neisseria gonorrhoeae MS11

73.684

90.986

0.67
  recA Neisseria gonorrhoeae strain FA1090

73.684

90.986

0.67
  recA Acinetobacter baumannii D1279779

68.513

96.62

0.662
  recA Ralstonia pseudosolanacearum GMI1000

74.286

88.732

0.659
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.072

94.085

0.603
  recA Helicobacter pylori strain NCTC11637

61.834

95.211

0.589
  recA Helicobacter pylori 26695

61.834

95.211

0.589
  recA Streptococcus pneumoniae D39

59.249

97.465

0.577
  recA Streptococcus pneumoniae TIGR4

59.249

97.465

0.577
  recA Streptococcus pneumoniae R6

59.249

97.465

0.577
  recA Streptococcus pneumoniae Rx1

59.249

97.465

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.883

91.831

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

90.423

0.575
  recA Streptococcus mitis SK321

61.42

91.268

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

61.682

90.423

0.558
  recA Streptococcus mitis NCTC 12261

60.802

91.268

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.394

92.958

0.552
  recA Streptococcus pyogenes NZ131

60

91.549

0.549
  recA Lactococcus lactis subsp. cremoris KW2

59.568

91.268

0.544
  recA Streptococcus mutans UA159

59.077

91.549

0.541