Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NYR19_RS01885 Genome accession   NZ_CP103874
Coordinates   397109..397624 (+) Length   171 a.a.
NCBI ID   WP_018347305.1    Uniprot ID   A0A0A3A3X9
Organism   Gallibacterium anatis strain TH22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 392109..402624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR19_RS01870 (NYR19_01870) - 392293..392946 (-) 654 Protein_346 IS1595 family transposase -
  NYR19_RS01875 (NYR19_01875) - 393040..393618 (-) 579 WP_302508673.1 hypothetical protein -
  NYR19_RS01880 (NYR19_01880) uvrA 394133..396967 (-) 2835 WP_302508674.1 excinuclease ABC subunit UvrA -
  NYR19_RS01885 (NYR19_01885) ssb 397109..397624 (+) 516 WP_018347305.1 single-stranded DNA-binding protein Machinery gene
  NYR19_RS01890 (NYR19_01890) - 397721..398263 (-) 543 WP_302508675.1 LysR substrate-binding domain-containing protein -
  NYR19_RS01895 (NYR19_01895) - 398297..398731 (+) 435 Protein_351 amidophosphoribosyltransferase -
  NYR19_RS01900 (NYR19_01900) - 398731..399306 (+) 576 WP_021462090.1 UbiX family flavin prenyltransferase -
  NYR19_RS01905 (NYR19_01905) - 399670..400080 (+) 411 WP_302508676.1 DUF805 domain-containing protein -
  NYR19_RS01910 (NYR19_01910) - 400211..401278 (+) 1068 WP_021462088.1 DarT ssDNA thymidine ADP-ribosyltransferase family protein -
  NYR19_RS01915 (NYR19_01915) - 401290..402003 (+) 714 WP_021462087.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19146.28 Da        Isoelectric Point: 4.9833

>NTDB_id=726315 NYR19_RS01885 WP_018347305.1 397109..397624(+) (ssb) [Gallibacterium anatis strain TH22]
MAGVNKVIIVGNLGNDPELRTFANGDAVANISVATSERWQDKQSGEWREITEWHRIVLFRRLAEIAGQYLRKGSKVYIEG
KLRTRKWQDQNGQDRYTTEIQADTLQMLDSRSDRMGADMSAPMAQPQNQFAQPSYNQAAAQPNQFAQPAAAKAPQAAVNP
DTADFDDDMPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=726315 NYR19_RS01885 WP_018347305.1 397109..397624(+) (ssb) [Gallibacterium anatis strain TH22]
ATGGCAGGCGTTAATAAAGTAATTATTGTGGGAAATTTGGGAAATGATCCTGAATTAAGAACCTTTGCAAATGGCGATGC
GGTCGCCAATATCAGTGTTGCCACCAGTGAACGTTGGCAAGACAAACAGAGCGGAGAATGGCGAGAAATTACTGAATGGC
ACCGCATCGTGTTATTCCGCCGTTTGGCAGAAATCGCCGGACAATATTTGCGTAAAGGATCAAAAGTTTATATAGAAGGC
AAATTACGCACGCGTAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACCGAAATTCAAGCGGACACATTACAAAT
GTTGGACAGTCGCAGCGATCGTATGGGCGCGGATATGTCTGCACCAATGGCTCAACCGCAAAATCAGTTTGCGCAACCGT
CTTATAATCAAGCGGCAGCTCAACCTAACCAATTCGCTCAACCGGCAGCCGCCAAAGCACCGCAAGCAGCGGTAAATCCG
GATACAGCGGATTTTGATGATGATATGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3A3X9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

64.286

100

0.684
  ssb Vibrio cholerae strain A1552

52

100

0.532
  ssb Neisseria meningitidis MC58

42.938

100

0.444
  ssb Neisseria gonorrhoeae MS11

43.103

100

0.439