Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NX081_RS18370 Genome accession   NZ_CP103856
Coordinates   3652265..3652954 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SRCM116265     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3647265..3657954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX081_RS18335 (NX081_18335) - 3647463..3647945 (-) 483 WP_003151394.1 flagellar protein FlgN -
  NX081_RS18340 (NX081_18340) flgM 3647960..3648226 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NX081_RS18345 (NX081_18345) - 3648296..3648715 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  NX081_RS18350 (NX081_18350) comFC 3648789..3649478 (-) 690 WP_197714552.1 phosphoribosyltransferase family protein Machinery gene
  NX081_RS18355 (NX081_18355) - 3649484..3649768 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  NX081_RS18360 (NX081_18360) comFA 3649826..3651211 (-) 1386 WP_060562494.1 DEAD/DEAH box helicase Machinery gene
  NX081_RS18365 (NX081_18365) - 3651319..3652167 (-) 849 WP_003151387.1 DegV family protein -
  NX081_RS18370 (NX081_18370) degU 3652265..3652954 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NX081_RS18375 (NX081_18375) degS 3653031..3654194 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  NX081_RS18380 (NX081_18380) - 3654417..3655064 (+) 648 WP_007614107.1 YigZ family protein -
  NX081_RS18385 (NX081_18385) - 3655069..3656289 (+) 1221 WP_012118574.1 LCP family protein -
  NX081_RS18390 (NX081_18390) - 3656388..3657464 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=726116 NX081_RS18370 WP_003219701.1 3652265..3652954(-) (degU) [Bacillus velezensis strain SRCM116265]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=726116 NX081_RS18370 WP_003219701.1 3652265..3652954(-) (degU) [Bacillus velezensis strain SRCM116265]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1