Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NX081_RS18360 Genome accession   NZ_CP103856
Coordinates   3649826..3651211 (-) Length   461 a.a.
NCBI ID   WP_060562494.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM116265     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3644826..3656211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX081_RS18325 (NX081_18325) flgL 3645001..3645918 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  NX081_RS18330 (NX081_18330) flgK 3645930..3647447 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  NX081_RS18335 (NX081_18335) - 3647463..3647945 (-) 483 WP_003151394.1 flagellar protein FlgN -
  NX081_RS18340 (NX081_18340) flgM 3647960..3648226 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NX081_RS18345 (NX081_18345) - 3648296..3648715 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  NX081_RS18350 (NX081_18350) comFC 3648789..3649478 (-) 690 WP_197714552.1 phosphoribosyltransferase family protein Machinery gene
  NX081_RS18355 (NX081_18355) - 3649484..3649768 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  NX081_RS18360 (NX081_18360) comFA 3649826..3651211 (-) 1386 WP_060562494.1 DEAD/DEAH box helicase Machinery gene
  NX081_RS18365 (NX081_18365) - 3651319..3652167 (-) 849 WP_003151387.1 DegV family protein -
  NX081_RS18370 (NX081_18370) degU 3652265..3652954 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NX081_RS18375 (NX081_18375) degS 3653031..3654194 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  NX081_RS18380 (NX081_18380) - 3654417..3655064 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52704.19 Da        Isoelectric Point: 10.2284

>NTDB_id=726115 NX081_RS18360 WP_060562494.1 3649826..3651211(-) (comFA) [Bacillus velezensis strain SRCM116265]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEEKGCLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEADLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRNGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=726115 NX081_RS18360 WP_060562494.1 3649826..3651211(-) (comFA) [Bacillus velezensis strain SRCM116265]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCTTTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAAGAAAAAGGCTGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGATTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTTCCGG
AGCCGCGTTTTTTGTGGTGCGGAAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCTCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAAACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAGCATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(330-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.739

99.783

0.616