Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NX081_RS18350 Genome accession   NZ_CP103856
Coordinates   3648789..3649478 (-) Length   229 a.a.
NCBI ID   WP_197714552.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM116265     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3643789..3654478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX081_RS18315 (NX081_18315) fliW 3643880..3644311 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  NX081_RS18320 (NX081_18320) - 3644341..3644910 (-) 570 WP_007407476.1 DUF6470 family protein -
  NX081_RS18325 (NX081_18325) flgL 3645001..3645918 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  NX081_RS18330 (NX081_18330) flgK 3645930..3647447 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  NX081_RS18335 (NX081_18335) - 3647463..3647945 (-) 483 WP_003151394.1 flagellar protein FlgN -
  NX081_RS18340 (NX081_18340) flgM 3647960..3648226 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NX081_RS18345 (NX081_18345) - 3648296..3648715 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  NX081_RS18350 (NX081_18350) comFC 3648789..3649478 (-) 690 WP_197714552.1 phosphoribosyltransferase family protein Machinery gene
  NX081_RS18355 (NX081_18355) - 3649484..3649768 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  NX081_RS18360 (NX081_18360) comFA 3649826..3651211 (-) 1386 WP_060562494.1 DEAD/DEAH box helicase Machinery gene
  NX081_RS18365 (NX081_18365) - 3651319..3652167 (-) 849 WP_003151387.1 DegV family protein -
  NX081_RS18370 (NX081_18370) degU 3652265..3652954 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NX081_RS18375 (NX081_18375) degS 3653031..3654194 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25157.77 Da        Isoelectric Point: 8.2927

>NTDB_id=726114 NX081_RS18350 WP_197714552.1 3648789..3649478(-) (comFC) [Bacillus velezensis strain SRCM116265]
MNCLLCDSPISSSLTWRSLFSLAPGQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=726114 NX081_RS18350 WP_197714552.1 3648789..3649478(-) (comFC) [Bacillus velezensis strain SRCM116265]
CTGAATTGTTTATTGTGTGATTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCGGGGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGTCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603