Detailed information NTG0725945

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: NYR96_RS18500
• Genome accession: NZ_CP103845
• Coordinates: 4289470..4290528 (-)
• Length: 352 a.a.
• NCBI ID: WP_043909467.1
• Uniprot ID: A0A0G8KJ77
• Organism: Xanthomonas hortorum pv. pelargonii strain 22-322
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4284470..4295528

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR96_RS18475 (NYR96_18475)	-	4286431..4286781 (-)	351	Protein_3608	pilus assembly protein PilP	-
NYR96_RS18480 (NYR96_18480)	-	4286800..4287762 (-)	963	WP_006448937.1	IS1595 family transposase	-
NYR96_RS18485 (NYR96_18485)	-	4287853..4288044 (-)	192	Protein_3610	fimbrial protein	-
NYR96_RS18490 (NYR96_18490)	-	4288041..4288706 (-)	666	WP_006451354.1	type 4a pilus biogenesis protein PilO	-
NYR96_RS18495 (NYR96_18495)	-	4288703..4289470 (-)	768	WP_168958756.1	PilN domain-containing protein	-
NYR96_RS18500 (NYR96_18500)	comM	4289470..4290528 (-)	1059	WP_043909467.1	pilus assembly protein PilM	Machinery gene
NYR96_RS18505 (NYR96_18505)	-	4290744..4293170 (+)	2427	WP_168958755.1	penicillin-binding protein 1A	-
NYR96_RS18510 (NYR96_18510)	-	4293387..4294037 (+)	651	WP_168958754.1	hypothetical protein	-
NYR96_RS18515 (NYR96_18515)	-	4294141..4295430 (-)	1290	WP_168958753.1	citrate synthase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37624.24 Da
• Isoelectric Point: 4.3882

>NTDB_id=725945 NYR96_RS18500 WP_043909467.1 4289470..4290528(-) (comM) [Xanthomonas hortorum pv. pelargonii strain 22-322]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVDHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=725945 NYR96_RS18500 WP_043909467.1 4289470..4290528(-) (comM) [Xanthomonas hortorum pv. pelargonii strain 22-322]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
ACGTAGCGGGAATCGTTTTCGCGTGGATCATTACGCGGTGGAACCGTTGCCGCCGAACGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAATCGTTCCGGCAGCAAGGCCAAGAACGCGGCTGCGGCC
GTGGCCGGGTCGGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGATCTGGACGACAGCGATATGGAAGCCCAGGTCGA
ACTCGAGGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTTGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCTGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCCGCGCTGGAACTCGGT
GGCCTGGTTGCCAAGGTGATGGACGTAGAGGCATTTGCGGTCGAAAACGCGTTTGCCCTGGTCGCCAGCGAGCTGCCGGT
GGCCGCCGATGCAGTGGTTGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGCCTGACCTATGAAGAA
GCCGGCTTGGCCAAGCGCCAGGGCGGGTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAAGAGGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACCGTGGTCGCCAACCCGCTTGCA
CAGATGACGCTCGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATTGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A0G8KJ77

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	50.852	100	0.509
pilM	Acinetobacter baumannii D1279779	50.568	100	0.506
comM	Acinetobacter baylyi ADP1	50.712	99.716	0.506
pilM	Legionella pneumophila strain ERS1305867	47.293	99.716	0.472