Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NYR99_RS17740 Genome accession   NZ_CP103840
Coordinates   4076503..4077561 (-) Length   352 a.a.
NCBI ID   WP_039423791.1    Uniprot ID   -
Organism   Xanthomonas dyei strain 22-325     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4071503..4082561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR99_RS17720 (NYR99_17690) - 4072620..4074506 (-) 1887 WP_228324494.1 type IV pilus secretin PilQ family protein -
  NYR99_RS17725 (NYR99_17695) - 4074526..4075059 (-) 534 WP_316688200.1 pilus assembly protein PilP -
  NYR99_RS17730 (NYR99_17700) - 4075056..4075721 (-) 666 WP_316688203.1 type 4a pilus biogenesis protein PilO -
  NYR99_RS17735 (NYR99_17705) - 4075718..4076503 (-) 786 WP_316688206.1 PilN domain-containing protein -
  NYR99_RS17740 (NYR99_17710) comM 4076503..4077561 (-) 1059 WP_039423791.1 pilus assembly protein PilM Machinery gene
  NYR99_RS17745 (NYR99_17715) - 4077681..4080206 (+) 2526 WP_316692662.1 penicillin-binding protein 1A -
  NYR99_RS17750 (NYR99_17720) - 4080705..4081352 (+) 648 WP_228324595.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37622.21 Da        Isoelectric Point: 4.3924

>NTDB_id=725906 NYR99_RS17740 WP_039423791.1 4076503..4077561(-) (comM) [Xanthomonas dyei strain 22-325]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=725906 NYR99_RS17740 WP_039423791.1 4076503..4077561(-) (comM) [Xanthomonas dyei strain 22-325]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTCATTGGTGTCGACATCAGTTCTACTGCCGTGAAGCTCTTGCAGCTGTC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAATCGCTCCGGCAGCAAGGCCAAGAACGCGGCTGCGGCC
GTGGCCGGTTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGACAGCGATCTGGAAGCTCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCCGCCTCGCGCTCGGAGAATGTGGAGCTGCGCCAATCGGCGCTGGAACTCGGT
GGTCTGACCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTTGCCCTGGTCGCCAGCGAACTGCCGGT
GGCTGCCGATGCGGTGGTCGCCCTGGTCGACATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGCTCTGGCCGTAGCC
TGTATAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTCACCGACGAAGTGATGCGCCGCTATGGCCTGACCTACGAAGAG
GCCGGCCTGGCCAAGCGTCAGGGCGGCCTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGTTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTGGGCGTGACCACCGTGGTCGCCAACCCGCTTGCG
CAGATGACGCTGGGTCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATTGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472