Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NYR97_RS03160 Genome accession   NZ_CP103836
Coordinates   776792..777850 (-) Length   352 a.a.
NCBI ID   WP_043909467.1    Uniprot ID   A0A0G8KJ77
Organism   Xanthomonas hydrangeae strain 22-323     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 771792..782850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR97_RS03140 (NYR97_03120) - 772918..774816 (-) 1899 WP_316696669.1 type IV pilus secretin PilQ family protein -
  NYR97_RS03145 (NYR97_03125) - 774836..775369 (-) 534 WP_006451353.1 pilus assembly protein PilP -
  NYR97_RS03150 (NYR97_03130) - 775366..776031 (-) 666 WP_006451354.1 type 4a pilus biogenesis protein PilO -
  NYR97_RS03155 (NYR97_03135) - 776028..776792 (-) 765 WP_316696670.1 PilN domain-containing protein -
  NYR97_RS03160 (NYR97_03140) comM 776792..777850 (-) 1059 WP_043909467.1 pilus assembly protein PilM Machinery gene
  NYR97_RS03165 (NYR97_03145) - 778066..780492 (+) 2427 WP_316696671.1 penicillin-binding protein 1A -
  NYR97_RS03170 (NYR97_03150) - 780708..781358 (+) 651 WP_316696672.1 hypothetical protein -
  NYR97_RS03175 (NYR97_03155) - 781462..782751 (-) 1290 WP_006451360.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37624.24 Da        Isoelectric Point: 4.3882

>NTDB_id=725846 NYR97_RS03160 WP_043909467.1 776792..777850(-) (comM) [Xanthomonas hydrangeae strain 22-323]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVDHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=725846 NYR97_RS03160 WP_043909467.1 776792..777850(-) (comM) [Xanthomonas hydrangeae strain 22-323]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
ACGTAGCGGGAATCGTTTTCGCGTGGATCATTACGCGGTGGAACCGTTGCCGCCGAACGCGGTCGTTGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAATCGTTCCGGCAGCAAGGCCAAGAACGCGGCTGCGGCC
GTGGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGACAGCGATATGGAAGCCCAGGTCGA
ACTAGAGGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAAGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCTGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCCGCGCTGGAACTCGGT
GGCCTGGTTGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAAAACGCGTTTGCCCTGGTCGCCAGCGAGCTGCCGGT
GGCCGCCGATGCAGTGGTTGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGCCTGACCTATGAAGAA
GCCGGCCTGGCCAAGCGTCAGGGCGGTTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAAGAGGCGACGGT
GCAACAGATCAGCCGCTTGTTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACCGTGGTCGCCAACCCGCTTGCA
CAGATGACGCTCGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATTGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8KJ77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50.712

99.716

0.506
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472