Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NYR97_RS00835 Genome accession   NZ_CP103836
Coordinates   208487..209014 (-) Length   175 a.a.
NCBI ID   WP_316696091.1    Uniprot ID   A0AAU0BAS3
Organism   Xanthomonas hydrangeae strain 22-323     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 203487..214014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR97_RS00830 (NYR97_00830) - 205981..208179 (-) 2199 WP_316696090.1 TonB-dependent receptor -
  NYR97_RS00835 (NYR97_00835) ssb 208487..209014 (-) 528 WP_316696091.1 single-stranded DNA-binding protein Machinery gene
  NYR97_RS00840 (NYR97_00840) - 209288..210286 (+) 999 WP_316698471.1 polyprenyl synthetase family protein -
  NYR97_RS00845 (NYR97_00845) murD 210489..211898 (-) 1410 WP_316696093.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  NYR97_RS00850 (NYR97_00850) murL 211879..213234 (-) 1356 WP_316696094.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  NYR97_RS00855 (NYR97_00855) - 213231..213689 (-) 459 WP_316696095.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18844.74 Da        Isoelectric Point: 5.3177

>NTDB_id=725838 NYR97_RS00835 WP_316696091.1 208487..209014(-) (ssb) [Xanthomonas hydrangeae strain 22-323]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGGMGGDRPQRAQAPRQQQGGGGGGQGGGQDYAPRRQQPAQQQ
SAPPMDDFADDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=725838 NYR97_RS00835 WP_316696091.1 208487..209014(-) (ssb) [Xanthomonas hydrangeae strain 22-323]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACGACCAGCATGCGCAAGGACCGCGAAGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
GAGTTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGTGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCTCCGCGCC
AGCAGCAGGGTGGCGGCGGTGGCGGTCAGGGCGGCGGTCAGGATTACGCACCGCGTCGTCAGCAGCCGGCCCAGCAGCAG
TCCGCGCCGCCGATGGACGACTTTGCGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.902

100

0.48
  ssb Neisseria meningitidis MC58

45.506

100

0.463
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.463
  ssb Glaesserella parasuis strain SC1401

45.251

100

0.463