Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR63_RS09235 Genome accession   NZ_CP103834
Coordinates   1983029..1984183 (+) Length   384 a.a.
NCBI ID   WP_279457251.1    Uniprot ID   -
Organism   Actinobacillus genomosp. 1 strain 3216     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1978029..1989183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR63_RS09210 (NYR63_09205) - 1978527..1979240 (+) 714 WP_279457247.1 L-ribulose-5-phosphate 4-epimerase -
  NYR63_RS09215 (NYR63_09210) - 1979404..1980033 (-) 630 WP_279457248.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  NYR63_RS09220 (NYR63_09215) - 1980360..1981097 (+) 738 WP_279457249.1 hypothetical protein -
  NYR63_RS09225 (NYR63_09220) rfaD 1981265..1982191 (-) 927 WP_279457250.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR63_RS09230 (NYR63_09225) def 1982331..1982843 (-) 513 WP_039195517.1 peptide deformylase -
  NYR63_RS09235 (NYR63_09230) dprA 1983029..1984183 (+) 1155 WP_279457251.1 DNA-processing protein DprA Machinery gene
  NYR63_RS09240 (NYR63_09235) - 1984228..1986234 (-) 2007 WP_279457252.1 oligopeptide transporter, OPT family -
  NYR63_RS09245 (NYR63_09240) - 1986454..1987809 (-) 1356 WP_279457253.1 PTS ascorbate transporter subunit IIC -
  NYR63_RS09250 (NYR63_09245) - 1987818..1988090 (-) 273 WP_279457254.1 PTS sugar transporter subunit IIB -
  NYR63_RS09255 (NYR63_09250) secE 1988398..1988811 (+) 414 WP_279457255.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42906.28 Da        Isoelectric Point: 5.2566

>NTDB_id=725832 NYR63_RS09235 WP_279457251.1 1983029..1984183(+) (dprA) [Actinobacillus genomosp. 1 strain 3216]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESALAWAEQPNQHLLTLFD
EEYPFLLRQISTAPPVLFVRGSLSSLSLPQIAIVGSRDFSAYGEYWAGYFTEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLEQVYPARHKKLAEQIVESGGSLVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATLNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGAVLTETIEDILQAIQYQLPDQPQQQVLFEPQQAVEKAPFFAKADVPNKVN
HLAKKLPEMTACQQQIVEHISLEPISIDDLAKATALEVEMLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725832 NYR63_RS09235 WP_279457251.1 1983029..1984183(+) (dprA) [Actinobacillus genomosp. 1 strain 3216]
ATGTCTCAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGCGCGCAGCGCATTGCTCGTCTGTTATCCGAAGT
GGATTTTGCCCAATTTTGCCAATATGACAAACGCCAATTACAACAAATCGGTTGGAATGAGAAACAGATTCAACGCTGGT
TTAATCCGGAAATGCGTTGGATTGAGAGTGCATTGGCGTGGGCGGAGCAACCGAATCAACATTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATCAGCACCGCACCGCCAGTGTTATTTGTGCGAGGTTCGCTAAGCAGTTTGAG
CTTGCCGCAAATTGCGATTGTCGGTAGCCGAGATTTTTCCGCTTACGGTGAATACTGGGCGGGCTATTTTACCGAACAAC
TGATTAAACATCATTTGGCTGTAACCAGCGGATTAGCAATCGGTATAGACGGTTTTTGTCATCAGCGAGCGGTAGCGGAA
CAGGGCATCACCATTGCCGTTTTGGGTAGCGGTTTAGAGCAAGTGTATCCGGCAAGACATAAAAAACTGGCGGAACAGAT
TGTTGAAAGCGGTGGGTCGTTAGTGTCGGAATTTTTCCCGAATCAACCGCCGCTTGCCGAGAATTTCCCGCGTCGTAATC
GCATTATCAGCGGTTTGTCACTCGGTACATTAGTGGTGGAAGCCACATTAAATAGCGGCTCGCTGATTACCGCCCGTTAT
GCGTTGGAGCAAGGACGAGAAGTTTTTGCGTTACCGAATTCGGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGGTCTTAACTGAAACGATAGAGGATATTTTACAAGCGATTCAATATCAACTGCCGGATCAGCCTCAGC
AACAGGTGCTGTTTGAGCCGCAACAAGCGGTCGAAAAAGCCCCATTTTTTGCAAAAGCTGATGTGCCGAATAAGGTCAAT
CATCTTGCAAAAAAATTGCCGGAAATGACCGCTTGTCAGCAACAAATTGTGGAACATATCAGTCTTGAACCGATTTCGAT
TGACGATTTGGCGAAAGCGACCGCATTGGAAGTGGAAATGCTATTAGTCGAGTTATTGGGTTTGGAATTATTAAGTGTGA
TTAAGCAAGTGAGCGGCGGTTATGTCAGGCAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)

DprA winged helix domain (DprA_WH)

(325-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.278

99.219

0.737
  dprA Haemophilus influenzae Rd KW20

51.297

90.365

0.464
  dprA Vibrio campbellii strain DS40M4

45.789

98.958

0.453
  dprA Vibrio cholerae strain A1552

41.985

100

0.43
  dprA Legionella pneumophila strain ERS1305867

37.076

99.74

0.37