Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR63_RS07850 Genome accession   NZ_CP103834
Coordinates   1697763..1698107 (+) Length   114 a.a.
NCBI ID   WP_279457035.1    Uniprot ID   -
Organism   Actinobacillus genomosp. 1 strain 3216     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1692763..1703107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR63_RS07825 (NYR63_07820) rpsL 1692876..1693250 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  NYR63_RS07830 (NYR63_07825) rfaC 1693371..1694330 (-) 960 WP_279457031.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR63_RS07835 (NYR63_07830) waaF 1694405..1695442 (-) 1038 WP_279457032.1 lipopolysaccharide heptosyltransferase II -
  NYR63_RS07840 (NYR63_07835) - 1695524..1695928 (-) 405 WP_279457033.1 GlcNAc transferase -
  NYR63_RS07845 (NYR63_07840) - 1696050..1697456 (-) 1407 WP_279457034.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR63_RS07850 (NYR63_07845) comEA/comE1 1697763..1698107 (+) 345 WP_279457035.1 ComEA family DNA-binding protein Machinery gene
  NYR63_RS07855 (NYR63_07850) asd 1698257..1699147 (+) 891 WP_279457036.1 archaetidylserine decarboxylase -
  NYR63_RS07860 (NYR63_07855) - 1699264..1701627 (+) 2364 WP_279457037.1 DEAD/DEAH box helicase family protein -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12285.24 Da        Isoelectric Point: 10.2040

>NTDB_id=725828 NYR63_RS07850 WP_279457035.1 1697763..1698107(+) (comEA/comE1) [Actinobacillus genomosp. 1 strain 3216]
MKKLTTLSISFMIALLSGNTIAKPNQVSASEPTPVIQQATMTGKAVEKQNQVNINTADAAEIKAKLVGIGEKKAQAIVDY
RTKNGSFITIEQLTEVSGIGKATLEKNRERIVLE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=725828 NYR63_RS07850 WP_279457035.1 1697763..1698107(+) (comEA/comE1) [Actinobacillus genomosp. 1 strain 3216]
ATGAAAAAACTTACCACACTTAGCATTAGCTTCATGATTGCTCTGCTATCCGGCAATACGATAGCTAAACCAAATCAAGT
ATCCGCATCGGAACCTACACCTGTTATTCAACAAGCGACTATGACGGGAAAAGCTGTCGAGAAACAGAATCAAGTTAATA
TCAATACGGCTGATGCGGCGGAAATAAAAGCGAAACTAGTCGGCATCGGCGAGAAAAAAGCACAAGCGATAGTCGATTAT
CGCACCAAAAACGGTTCTTTTATTACTATAGAGCAACTTACCGAAGTATCCGGTATCGGTAAAGCAACGCTAGAGAAAAA
TCGTGAACGCATTGTACTAGAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.018

100

0.57
  comE1/comEA Haemophilus influenzae Rd KW20

46.018

99.123

0.456
  comEA Vibrio cholerae C6706

48.913

80.702

0.395
  comEA Vibrio cholerae strain A1552

48.913

80.702

0.395