Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   P1A14_RS08020 Genome accession   NZ_CP119338
Coordinates   1655950..1656396 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain N09HSA11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1650950..1661396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1A14_RS07990 (P1A14_07990) gcvPA 1651876..1653222 (-) 1347 WP_000019690.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  P1A14_RS07995 (P1A14_07995) gcvT 1653242..1654333 (-) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  P1A14_RS08000 (P1A14_08000) - 1654492..1655016 (-) 525 WP_001015120.1 shikimate kinase -
  P1A14_RS08005 (P1A14_08005) - 1655006..1655152 (-) 147 WP_001792109.1 hypothetical protein -
  P1A14_RS08010 (P1A14_08010) comGF 1655249..1655746 (-) 498 WP_275593703.1 competence type IV pilus minor pilin ComGF Machinery gene
  P1A14_RS08015 (P1A14_08015) comGE 1655664..1655963 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  P1A14_RS08020 (P1A14_08020) comGD 1655950..1656396 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  P1A14_RS08025 (P1A14_08025) comGC 1656374..1656685 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  P1A14_RS08030 (P1A14_08030) - 1656699..1657205 (-) 507 Protein_1579 type II secretion system F family protein -
  P1A14_RS08035 (P1A14_08035) - 1657309..1658481 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  P1A14_RS08040 (P1A14_08040) - 1658523..1659101 (-) 579 Protein_1581 type II secretion system F family protein -
  P1A14_RS08045 (P1A14_08045) comGA 1659073..1660047 (-) 975 WP_031587486.1 competence type IV pilus ATPase ComGA Machinery gene
  P1A14_RS08050 (P1A14_08050) - 1660099..1660722 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  P1A14_RS08055 (P1A14_08055) - 1660719..1661048 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=725795 P1A14_RS08020 WP_001788899.1 1655950..1656396(-) (comGD) [Staphylococcus aureus strain N09HSA11]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=725795 P1A14_RS08020 WP_001788899.1 1655950..1656396(-) (comGD) [Staphylococcus aureus strain N09HSA11]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1