Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR87_RS09365 Genome accession   NZ_CP103831
Coordinates   2024150..2025304 (+) Length   384 a.a.
NCBI ID   WP_279480735.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 1812     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2019150..2030304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR87_RS09330 (NYR87_09325) - 2020132..2020449 (-) 318 WP_279444229.1 HipA N-terminal domain-containing protein -
  NYR87_RS09335 (NYR87_09330) - 2020437..2020745 (-) 309 WP_279437035.1 helix-turn-helix transcriptional regulator -
  NYR87_RS09340 (NYR87_09335) - 2020948..2021238 (+) 291 WP_005602339.1 YfcZ/YiiS family protein -
  NYR87_RS09345 (NYR87_09340) - 2021326..2021655 (+) 330 WP_039198285.1 SMR family transporter -
  NYR87_RS09350 (NYR87_09345) - 2021734..2022228 (-) 495 WP_279480732.1 hemerythrin domain-containing protein -
  NYR87_RS09355 (NYR87_09350) rfaD 2022387..2023313 (-) 927 WP_015674211.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR87_RS09360 (NYR87_09355) def 2023453..2023965 (-) 513 WP_005599196.1 peptide deformylase -
  NYR87_RS09365 (NYR87_09360) dprA 2024150..2025304 (+) 1155 WP_279480735.1 DNA-processing protein DprA Machinery gene
  NYR87_RS09370 (NYR87_09365) - 2025348..2027351 (-) 2004 WP_279480737.1 oligopeptide transporter, OPT family -
  NYR87_RS09375 (NYR87_09370) - 2027572..2028927 (-) 1356 WP_279480738.1 PTS ascorbate transporter subunit IIC -
  NYR87_RS09380 (NYR87_09375) - 2028936..2029208 (-) 273 WP_039198279.1 PTS sugar transporter subunit IIB -
  NYR87_RS09385 (NYR87_09380) secE 2029514..2029927 (+) 414 WP_039198278.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42830.12 Da        Isoelectric Point: 5.6726

>NTDB_id=725786 NYR87_RS09365 WP_279480735.1 2024150..2025304(+) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 1812]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFVQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESALVWAEQPNQRLLTLFD
EEYPFLLRQISTAPPVLFVRGSISSLSLPQIAIVGSRDFSAYGEYWAGYFTEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLADQIVASGGALVSEFSPNQPPLAENFPRRNRIISGLSLGTLVVEATVNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGAVLTETIEDILQAIQYQLPDQPRQQALFEAEQAVEKAQFFAKTNMPNKVN
HFAKKLPEVTACQQQIVEHIGLDPISIDDLAKATTLEVETLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725786 NYR87_RS09365 WP_279480735.1 2024150..2025304(+) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 1812]
ATGTCTCAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGCGCGCAGCGAATAGCTCGTCTGTTATCCGAAGT
GGATTTCGTCCAATTTTGCCAATATGACAAGCGCCAATTACAACAAATTGGTTGGAACGAGAAACAGATTCAGCGCTGGT
TCAATCCGGAAATGCGTTGGATTGAGAGCGCATTGGTGTGGGCGGAACAACCGAATCAACGTTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATTAGCACCGCACCGCCGGTATTATTTGTGCGAGGTTCAATAAGCAGTTTGAG
TCTGCCGCAAATTGCGATTGTCGGCAGTCGAGACTTTTCCGCCTACGGAGAATACTGGGCGGGCTATTTTACCGAGCAAC
TGATTAAACATCATTTGGCGGTAACCAGCGGACTCGCGATAGGTATAGACGGTTTTTGTCATCAGCGAGCGGTAGCGGAA
CAGGGAATCACTATTGCCGTTTTGGGTAGCGGTTTAGATCAAGTCTATCCGGCAAGGCATAAAAAATTGGCGGATCAGAT
TGTCGCAAGCGGCGGGGCGTTAGTGTCGGAATTTTCTCCGAATCAACCGCCGCTTGCCGAGAATTTTCCTCGTCGTAATC
GGATTATCAGCGGTTTATCGCTTGGCACATTAGTGGTTGAAGCTACGGTGAATAGCGGTTCGCTGATTACCGCCCGTTAT
GCGTTGGAGCAAGGGCGAGAAGTTTTTGCGTTACCGAATTCGGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGGTCTTAACCGAAACGATAGAGGATATTTTGCAAGCGATTCAATATCAACTGCCGGATCAGCCTCGGC
AACAGGCTCTGTTTGAAGCGGAACAAGCGGTCGAAAAAGCACAATTTTTTGCAAAAACCAATATGCCAAATAAGGTAAAT
CATTTTGCAAAAAAATTGCCGGAAGTGACCGCTTGTCAGCAACAAATTGTGGAACATATCGGTCTTGATCCGATTTCGAT
TGATGATTTAGCGAAAGCGACCACATTGGAGGTGGAAACGCTATTAGTTGAGTTACTGGGTTTGGAATTATTAAGCGTGA
TTAAGCAGGTGAGTGGCGGTTATGTCAGACAATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(324-380)

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.491

99.219

0.729
  dprA Vibrio campbellii strain DS40M4

45.91

98.698

0.453
  dprA Haemophilus influenzae Rd KW20

48.991

90.365

0.443
  dprA Vibrio cholerae strain A1552

42.239

100

0.432
  dprA Legionella pneumophila strain ERS1305867

36.554

99.74

0.365