Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR86_RS08895 Genome accession   NZ_CP103830
Coordinates   1965537..1966691 (-) Length   384 a.a.
NCBI ID   WP_279623179.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 2499     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1960537..1971691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR86_RS08875 (NYR86_08875) secE 1960905..1961318 (-) 414 WP_039198278.1 preprotein translocase subunit SecE -
  NYR86_RS08880 (NYR86_08880) - 1961624..1961896 (+) 273 WP_039198279.1 PTS sugar transporter subunit IIB -
  NYR86_RS08885 (NYR86_08885) - 1961905..1963266 (+) 1362 WP_039198280.1 PTS ascorbate transporter subunit IIC -
  NYR86_RS08890 (NYR86_08890) - 1963486..1965492 (+) 2007 WP_279623178.1 oligopeptide transporter, OPT family -
  NYR86_RS08895 (NYR86_08895) dprA 1965537..1966691 (-) 1155 WP_279623179.1 DNA-processing protein DprA Machinery gene
  NYR86_RS08900 (NYR86_08900) def 1966876..1967388 (+) 513 WP_039195517.1 peptide deformylase -
  NYR86_RS08905 (NYR86_08905) rfaD 1967529..1968455 (+) 927 WP_015674211.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR86_RS08910 (NYR86_08910) - 1968620..1969114 (+) 495 WP_279471695.1 hemerythrin domain-containing protein -
  NYR86_RS08915 (NYR86_08915) - 1969182..1969511 (-) 330 WP_039198285.1 SMR family transporter -
  NYR86_RS08920 (NYR86_08920) - 1969599..1969889 (-) 291 WP_005602339.1 YfcZ/YiiS family protein -
  NYR86_RS08925 (NYR86_08925) - 1970043..1970675 (-) 633 WP_279623180.1 tellurite resistance TerB family protein -
  NYR86_RS08930 (NYR86_08930) - 1970852..1971142 (-) 291 WP_039198287.1 putative quinol monooxygenase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42817.09 Da        Isoelectric Point: 5.8734

>NTDB_id=725757 NYR86_RS08895 WP_279623179.1 1965537..1966691(-) (dprA) [Actinobacillus equuli subsp. equuli strain 2499]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFVQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESALAWAEQPNQHLLTLFD
EEYPFLLRQISTAPPVLFVRGSLSSLSLPQIAIVGSRDFSAYGEYWAGYFTEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLADQIVASGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATVNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGALLTETIEDILQAIQYQLPDQPRQQALFELPQAVENSQFFAKANVPNRGN
HLAKKLPEMTACQQQIVEHIGLNPISIDDLAKATTLEVETLLVELLGLELLSVIKQVNGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725757 NYR86_RS08895 WP_279623179.1 1965537..1966691(-) (dprA) [Actinobacillus equuli subsp. equuli strain 2499]
ATGTCACAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGGGCGCAGCGAATAGCTCGCTTGTTATCCGAAGT
GGATTTTGTCCAATTTTGCCAATATGACAAACGCCAATTACAACAAATCGGTTGGAACGAAAAACAAATTCAGCGCTGGT
TCAATCCGGAAATGCGTTGGATTGAGAGTGCATTGGCGTGGGCGGAGCAACCGAATCAACACTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATCAGCACCGCACCGCCGGTGTTATTTGTGCGAGGTTCGCTAAGTAGTTTGAG
CTTACCGCAAATTGCGATTGTCGGTAGCCGAGATTTTTCCGCCTACGGAGAATACTGGGCGGGCTATTTTACCGAGCAAC
TGATTAAACATCATTTGGCGGTAACCAGCGGACTCGCGATTGGTATAGACGGCTTTTGTCATCAGCGAGCGGTAGCGGAA
CAGGGAATCACTATTGCCGTTTTGGGTAGCGGTTTAGATCAAGTGTATCCGGCAAGGCATAAAAAATTGGCGGATCAGAT
TGTCGCAAGCGGCGGGGCGTTAGTGTCGGAATTTTTTCCGAATCAACCGCCGCTTGCCGAGAATTTTCCTCGTCGTAATC
GGATTATCAGCGGTTTATCGCTTGGCACATTAGTGGTGGAAGCTACGGTGAATAGCGGTTCGCTGATTACCGCCCGTTAT
GCGTTGGAGCAAGGGCGAGAAGTTTTTGCGTTACCGAATTCGGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGCTTTTAACTGAGACGATAGAGGATATTTTGCAAGCGATTCAATATCAACTGCCGGATCAGCCTCGGC
AACAGGCTCTGTTTGAACTGCCTCAAGCGGTTGAAAACTCACAATTTTTTGCAAAAGCCAACGTGCCGAATAGGGGCAAT
CACCTTGCAAAAAAATTGCCGGAAATGACCGCTTGTCAGCAACAAATTGTGGAACATATCGGTCTTAATCCGATTTCGAT
TGATGATTTAGCGAAAGCGACCACATTGGAGGTGGAGACGCTATTAGTCGAGTTACTTGGTTTGGAATTATTAAGTGTGA
TTAAGCAGGTGAATGGTGGTTATGTAAGGCAATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(325-380)

DNA recombination-mediator protein A (DNA_processg_A)

(69-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.016

99.219

0.734
  dprA Vibrio campbellii strain DS40M4

46.053

98.958

0.456
  dprA Haemophilus influenzae Rd KW20

49.856

90.365

0.451
  dprA Vibrio cholerae strain A1552

41.73

100

0.427
  dprA Legionella pneumophila strain ERS1305867

36.815

99.74

0.367