Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR81_RS09585 Genome accession   NZ_CP103826
Coordinates   2035429..2036583 (+) Length   384 a.a.
NCBI ID   WP_279479286.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3113     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2030429..2041583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR81_RS09550 (NYR81_09550) - 2031405..2031722 (-) 318 WP_279437034.1 HipA N-terminal domain-containing protein -
  NYR81_RS09555 (NYR81_09555) - 2031710..2032018 (-) 309 WP_279437035.1 helix-turn-helix transcriptional regulator -
  NYR81_RS09560 (NYR81_09560) - 2032221..2032511 (+) 291 WP_005602339.1 YfcZ/YiiS family protein -
  NYR81_RS09565 (NYR81_09565) - 2032599..2032928 (+) 330 WP_279441886.1 SMR family transporter -
  NYR81_RS09570 (NYR81_09570) - 2033007..2033501 (-) 495 WP_279441887.1 hemerythrin domain-containing protein -
  NYR81_RS09575 (NYR81_09575) rfaD 2033666..2034592 (-) 927 WP_015674211.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR81_RS09580 (NYR81_09580) def 2034732..2035244 (-) 513 WP_039195517.1 peptide deformylase -
  NYR81_RS09585 (NYR81_09585) dprA 2035429..2036583 (+) 1155 WP_279479286.1 DNA-processing protein DprA Machinery gene
  NYR81_RS09590 (NYR81_09590) - 2036628..2038631 (-) 2004 WP_279441888.1 oligopeptide transporter, OPT family -
  NYR81_RS09595 (NYR81_09595) - 2038852..2040207 (-) 1356 WP_279441889.1 PTS ascorbate transporter subunit IIC -
  NYR81_RS09600 (NYR81_09600) - 2040216..2040488 (-) 273 WP_039198279.1 PTS sugar transporter subunit IIB -
  NYR81_RS09605 (NYR81_09605) secE 2040794..2041207 (+) 414 WP_279441890.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42995.38 Da        Isoelectric Point: 6.0024

>NTDB_id=725657 NYR81_RS09585 WP_279479286.1 2035429..2036583(+) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 3113]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRRFNPEMRWIESALAWAEQPNQHLLTLFD
EEYPFLLRQISTAPPVLFVRGSVSSLSLPQVAIVGSRDFSAYGEYWAHYFSEQLIKHHLAVTGGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLAEQIVECGGALVSEFFPSQPPLAENFPRRNRIISGLSLGTLVVEATVNSGSLITARY
ALEQGREVFALPNSVQNPYAEGCHKLIKEGVILTETIEDILQAIQYQLPDQPLQRTLFEPQQAVEKVQFFTKAHIPNRGN
HLAKKLPEMTACQQQIVEHINLEPISIDDLAKATALEVETLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725657 NYR81_RS09585 WP_279479286.1 2035429..2036583(+) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 3113]
ATGTCTCAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGCGCGCAGCGAATAGCTCGTCTGTTATCCGAAGT
GGATTTTGCCCAATTTTGCCAATATGACAAACGCCAATTACAACAAATCGGTTGGAACGAAAAACAAATTCAGCGCCGGT
TCAATCCGGAAATGCGTTGGATTGAGAGTGCATTGGCGTGGGCGGAGCAACCGAATCAACACTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATTAGCACCGCGCCGCCGGTGTTATTTGTGCGAGGCTCGGTAAGCAGTTTGAG
TTTGCCGCAAGTTGCAATTGTTGGTAGTCGAGATTTTTCCGCCTACGGAGAATACTGGGCTCACTATTTTAGTGAGCAAT
TGATTAAACATCATTTGGCGGTTACCGGCGGACTCGCAATCGGCATAGACGGTTTTTGCCATCAGCGAGCGGTGGCGGAA
CAAGGCATTACTATTGCCGTGTTGGGTAGCGGTTTAGATCAAGTGTATCCGGCAAGGCACAAAAAATTGGCGGAGCAGAT
TGTCGAATGTGGCGGGGCGTTAGTGTCGGAGTTTTTCCCAAGTCAACCGCCGCTTGCTGAGAATTTTCCTCGCCGTAATC
GGATTATCAGCGGTTTGTCGCTTGGTACATTAGTGGTGGAAGCTACGGTAAATAGTGGTTCGTTGATTACCGCTCGTTAT
GCGTTGGAACAAGGGCGAGAAGTTTTTGCACTTCCCAATTCGGTACAGAATCCGTATGCGGAAGGCTGTCATAAACTGAT
CAAAGAAGGGGTGATTTTAACTGAAACAATAGAGGATATTTTGCAAGCGATTCAATATCAACTGCCGGATCAACCGCTAC
AGAGGACGTTATTTGAACCTCAACAAGCGGTCGAAAAAGTACAATTTTTTACAAAAGCCCATATACCGAATAGGGGTAAT
CATCTTGCAAAAAAATTGCCGGAAATGACCGCTTGTCAGCAACAAATTGTGGAGCATATCAACCTTGAGCCGATTTCGAT
TGATGATTTGGCAAAAGCGACTGCATTGGAAGTGGAAACGCTATTAGTCGAGTTACTGGGTTTGGAATTATTAAGTGTGA
TTAAGCAGGTGAGTGGTGGTTATGTTCGACAATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(325-380)

DNA recombination-mediator protein A (DNA_processg_A)

(69-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.541

99.219

0.74
  dprA Vibrio campbellii strain DS40M4

44.357

99.219

0.44
  dprA Haemophilus influenzae Rd KW20

47.839

90.365

0.432
  dprA Vibrio cholerae strain A1552

41.73

100

0.427
  dprA Legionella pneumophila strain ERS1305867

36.815

99.74

0.367