Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR80_RS09360 Genome accession   NZ_CP103825
Coordinates   2020679..2021833 (+) Length   384 a.a.
NCBI ID   WP_279438418.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3282     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2015679..2026833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR80_RS09325 (NYR80_09330) - 2016661..2016978 (-) 318 WP_279437034.1 HipA N-terminal domain-containing protein -
  NYR80_RS09330 (NYR80_09335) - 2016966..2017274 (-) 309 WP_279437035.1 helix-turn-helix transcriptional regulator -
  NYR80_RS09335 (NYR80_09340) - 2017477..2017767 (+) 291 WP_005602339.1 YfcZ/YiiS family protein -
  NYR80_RS09340 (NYR80_09345) - 2017855..2018184 (+) 330 WP_039198285.1 SMR family transporter -
  NYR80_RS09345 (NYR80_09350) - 2018263..2018757 (-) 495 WP_279438417.1 hemerythrin domain-containing protein -
  NYR80_RS09350 (NYR80_09355) rfaD 2018916..2019842 (-) 927 WP_015674211.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR80_RS09355 (NYR80_09360) def 2019982..2020494 (-) 513 WP_039195517.1 peptide deformylase -
  NYR80_RS09360 (NYR80_09365) dprA 2020679..2021833 (+) 1155 WP_279438418.1 DNA-processing protein DprA Machinery gene
  NYR80_RS09365 (NYR80_09370) - 2021877..2023880 (-) 2004 WP_279438419.1 oligopeptide transporter, OPT family -
  NYR80_RS09370 (NYR80_09375) - 2024101..2025456 (-) 1356 WP_279437038.1 PTS ascorbate transporter subunit IIC -
  NYR80_RS09375 (NYR80_09380) - 2025465..2025737 (-) 273 WP_279438420.1 PTS sugar transporter subunit IIB -
  NYR80_RS09380 (NYR80_09385) secE 2026045..2026458 (+) 414 WP_039198278.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42923.24 Da        Isoelectric Point: 5.4494

>NTDB_id=725633 NYR80_RS09360 WP_279438418.1 2020679..2021833(+) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 3282]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFVQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESALVWAEQPNQRLLTLFD
EEYPFLLRQISTAPPVLFVRGSISSLSLPQIAIVGSRDFSAYGEYWAGYFTEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLAEQIVESGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATVNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGAVLTETIEDILQAIQYQLPNQPRQQALFEPEQAVEKAPFFAKADVPNKVN
HFAKRLPEVTACQQQIVEHIGLDPISIDDLAKATTLEVETLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725633 NYR80_RS09360 WP_279438418.1 2020679..2021833(+) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 3282]
ATGTCTCAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGCGCGCAGCGAATAGCTCGTCTGTTATCCGAAGT
GGATTTCGTCCAATTTTGCCAATATGACAAGCGCCAATTACAACAAATTGGTTGGAACGAGAAACAGATTCAGCGCTGGT
TCAATCCGGAAATGCGTTGGATTGAGAGCGCATTGGTGTGGGCGGAACAACCGAATCAACGTTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATTAGCACCGCACCGCCGGTATTATTTGTGCGAGGTTCAATAAGCAGTTTGAG
TCTGCCGCAAATTGCGATTGTCGGCAGTCGAGACTTTTCCGCCTACGGAGAATACTGGGCGGGCTATTTTACCGAGCAAC
TGATTAAACATCATTTGGCGGTAACCAGCGGACTCGCGATTGGTATAGACGGCTTTTGTCATCAGCGAGCGGTGGCGGAA
CAAGGCATTACCATTGCCGTGTTGGGTAGCGGTTTAGATCAAGTCTATCCGGCAAGGCACAAAAAATTGGCGGAACAGAT
TGTTGAAAGCGGCGGGGCGTTAGTGTCGGAATTTTTCCCGAATCAACCGCCGCTTGCCGAGAATTTTCCTCGTCGTAATC
GGATTATCAGCGGTTTATCGCTTGGCACATTAGTGGTTGAAGCCACGGTGAATAGCGGTTCACTGATTACCGCCCGTTAT
GCGTTGGAGCAAGGGCGAGAAGTTTTTGCGTTACCGAATTCGGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGGTCTTAACCGAAACGATAGAGGATATTTTGCAAGCGATTCAATATCAACTACCGAATCAGCCTCGGC
AACAGGCGCTGTTTGAGCCGGAACAAGCGGTCGAAAAAGCCCCATTTTTTGCAAAAGCTGATGTGCCAAATAAGGTAAAT
CATTTTGCAAAAAGATTGCCGGAAGTGACCGCTTGTCAGCAACAAATTGTGGAACATATCGGTCTTGATCCGATTTCGAT
TGATGATTTAGCGAAAGCGACCACATTGGAGGTGGAAACGCTATTAGTTGAGTTACTGGGTTTGGAATTATTAAGCGTGA
TTAAGCAGGTGAGTGGCGGTTATGTCAGACAATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(325-380)

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.803

99.219

0.742
  dprA Haemophilus influenzae Rd KW20

51.009

90.365

0.461
  dprA Vibrio campbellii strain DS40M4

45.526

98.958

0.451
  dprA Vibrio cholerae strain A1552

42.239

100

0.432
  dprA Legionella pneumophila strain ERS1305867

37.076

99.74

0.37