Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PZ484_RS09415 Genome accession   NZ_CP119298
Coordinates   2012544..2012873 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SNDPR-01     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2007544..2017873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZ484_RS09400 - 2008273..2009217 (+) 945 WP_034072898.1 NAD-dependent epimerase/dehydratase family protein -
  PZ484_RS09405 - 2009318..2010343 (+) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  PZ484_RS09410 - 2010356..2012353 (+) 1998 WP_024929015.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  PZ484_RS09415 comEA/comE1 2012544..2012873 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  PZ484_RS09425 - 2013090..2014286 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  PZ484_RS09430 uvrB 2014474..2016486 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=725580 PZ484_RS09415 WP_003091430.1 2012544..2012873(+) (comEA/comE1) [Pseudomonas aeruginosa strain SNDPR-01]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=725580 PZ484_RS09415 WP_003091430.1 2012544..2012873(+) (comEA/comE1) [Pseudomonas aeruginosa strain SNDPR-01]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCACGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385