Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR77_RS10235 Genome accession   NZ_CP103822
Coordinates   2194078..2195232 (+) Length   384 a.a.
NCBI ID   WP_279440756.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3617     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2189078..2200232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR77_RS10200 (NYR77_10195) - 2189438..2190250 (+) 813 WP_279440750.1 urease accessory protein UreD -
  NYR77_RS10205 (NYR77_10200) - 2190272..2190562 (+) 291 WP_279440751.1 putative quinol monooxygenase -
  NYR77_RS10210 (NYR77_10205) - 2190738..2191370 (+) 633 WP_279440752.1 tellurite resistance TerB family protein -
  NYR77_RS10215 (NYR77_10210) - 2191524..2191814 (+) 291 WP_279440753.1 YfcZ/YiiS family protein -
  NYR77_RS10220 (NYR77_10215) - 2191903..2192232 (+) 330 WP_005620515.1 SMR family transporter -
  NYR77_RS10225 (NYR77_10220) rfaD 2192315..2193241 (-) 927 WP_279440754.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR77_RS10230 (NYR77_10225) def 2193381..2193893 (-) 513 WP_279440755.1 peptide deformylase -
  NYR77_RS10235 (NYR77_10230) dprA 2194078..2195232 (+) 1155 WP_279440756.1 DNA-processing protein DprA Machinery gene
  NYR77_RS10240 (NYR77_10235) - 2195277..2197280 (-) 2004 WP_279440757.1 oligopeptide transporter, OPT family -
  NYR77_RS10245 (NYR77_10240) - 2197501..2198856 (-) 1356 WP_279440758.1 PTS ascorbate transporter subunit IIC -
  NYR77_RS10250 (NYR77_10245) - 2198865..2199137 (-) 273 WP_039198279.1 PTS sugar transporter subunit IIB -
  NYR77_RS10255 (NYR77_10250) secE 2199443..2199856 (+) 414 WP_039198278.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 43086.58 Da        Isoelectric Point: 5.9280

>NTDB_id=725580 NYR77_RS10235 WP_279440756.1 2194078..2195232(+) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 3617]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFVQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESALVWAEQPNQRLLTLFD
EEYPFLLRQISTAPPVLFVRGSISSLNLPQIAIVGSRDFSAYGEYWAGYFTEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLAEQIVESGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATVNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGAVLTETIEDILQAIQYQLPDQPLQRTLFEPQQAVEKTQFFAKANMPNKVN
HFAKKLPEMTACQQQIVEHIGLNPISIDDLAKVTSLEVEILLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725580 NYR77_RS10235 WP_279440756.1 2194078..2195232(+) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 3617]
ATGTCTCAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGCGCGCAGCGAATAGCTCGTCTGTTATCCGAAGT
GGATTTCGTCCAATTTTGCCAATATGACAAGCGCCAATTACAACAAATTGGTTGGAACGAGAAACAGATTCAGCGCTGGT
TCAATCCGGAAATGCGTTGGATTGAGAGCGCATTGGTGTGGGCGGAACAACCGAATCAACGTTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATTAGCACCGCACCGCCGGTATTATTTGTGCGAGGTTCAATAAGCAGTTTGAA
CTTGCCGCAAATTGCGATTGTCGGCAGTCGAGACTTTTCCGCCTACGGAGAATACTGGGCGGGCTATTTTACCGAGCAAC
TGATTAAACATCATTTGGCGGTAACCAGCGGACTCGCGATTGGTATAGACGGCTTTTGTCATCAGCGAGCGGTGGCGGAA
CAAGGCATTACCATTGCCGTGTTGGGTAGCGGTTTAGATCAAGTCTATCCGGCAAGGCACAAAAAATTGGCGGAACAGAT
TGTTGAAAGCGGCGGGGCGTTAGTGTCGGAATTTTTCCCGAATCAACCGCCGCTTGCCGAGAATTTTCCTCGTCGTAATC
GGATTATCAGCGGTTTATCGCTTGGCACATTAGTGGTTGAAGCCACGGTGAATAGCGGTTCACTGATTACCGCCCGTTAT
GCGTTGGAGCAAGGGCGAGAAGTTTTTGCGTTACCGAATTCGGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGGTCTTAACCGAAACGATAGAGGATATTTTGCAAGCGATTCAATATCAACTGCCGGATCAACCGCTAC
AGAGGACGTTATTTGAACCTCAACAAGCGGTCGAAAAAACACAATTTTTTGCAAAAGCCAATATGCCAAATAAGGTAAAT
CATTTTGCAAAAAAATTGCCGGAAATGACCGCTTGTCAGCAACAAATTGTGGAACATATCGGTCTTAATCCGATTTCGAT
TGATGATTTAGCGAAAGTGACCTCATTGGAAGTGGAAATACTATTAGTCGAGTTACTTGGTTTGGAATTATTAAGTGTAA
TTAAGCAGGTGAGTGGCGGTTATGTCAGACAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)

DprA winged helix domain (DprA_WH)

(324-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.753

99.219

0.732
  dprA Haemophilus influenzae Rd KW20

49.28

90.365

0.445
  dprA Vibrio campbellii strain DS40M4

45.119

98.698

0.445
  dprA Vibrio cholerae strain A1552

42.239

100

0.432
  dprA Legionella pneumophila strain ERS1305867

36.815

99.74

0.367