Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR76_RS08915 Genome accession   NZ_CP103821
Coordinates   1947900..1949054 (-) Length   384 a.a.
NCBI ID   WP_279478202.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 3750     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1942900..1954054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR76_RS08895 (NYR76_08895) secE 1943277..1943690 (-) 414 WP_039198278.1 preprotein translocase subunit SecE -
  NYR76_RS08900 (NYR76_08900) - 1943996..1944268 (+) 273 WP_279439516.1 PTS sugar transporter subunit IIB -
  NYR76_RS08905 (NYR76_08905) - 1944277..1945632 (+) 1356 WP_279455891.1 PTS ascorbate transporter subunit IIC -
  NYR76_RS08910 (NYR76_08910) - 1945853..1947856 (+) 2004 WP_279478201.1 oligopeptide transporter, OPT family -
  NYR76_RS08915 (NYR76_08915) dprA 1947900..1949054 (-) 1155 WP_279478202.1 DNA-processing protein DprA Machinery gene
  NYR76_RS08920 (NYR76_08920) def 1949239..1949751 (+) 513 WP_039195517.1 peptide deformylase -
  NYR76_RS08925 (NYR76_08925) rfaD 1949891..1950817 (+) 927 WP_279478203.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR76_RS08930 (NYR76_08930) - 1950982..1951476 (+) 495 WP_279477082.1 hemerythrin domain-containing protein -
  NYR76_RS08935 (NYR76_08935) - 1951544..1951873 (-) 330 WP_279471694.1 SMR family transporter -
  NYR76_RS08940 (NYR76_08940) - 1951961..1952251 (-) 291 WP_005602339.1 YfcZ/YiiS family protein -
  NYR76_RS08945 (NYR76_08945) - 1952396..1953028 (-) 633 WP_279453329.1 tellurite resistance TerB family protein -
  NYR76_RS08950 (NYR76_08950) - 1953205..1953495 (-) 291 WP_279478204.1 putative quinol monooxygenase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42922.27 Da        Isoelectric Point: 5.6504

>NTDB_id=725552 NYR76_RS08915 WP_279478202.1 1947900..1949054(-) (dprA) [Actinobacillus equuli subsp. equuli strain 3750]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFVQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESALAWAEQPNQRLLTLFD
EEYPFLLRQISTAPPVLFVRGSLSSLSLPQIAIVGSRDFSAYGEYWAHYFSEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLAEQIVECGGALVSEFFPSQPPLAENFPRRNRIISGLSLGTLVVEATVNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGAVLTETIEDILQAIQYQLPNQPRQQALFEPEQAVEKAPFFAKADVPNKVN
HFAKKLPEVTACQQQIVEHIGLDPISIDDLAKATTLEVETLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725552 NYR76_RS08915 WP_279478202.1 1947900..1949054(-) (dprA) [Actinobacillus equuli subsp. equuli strain 3750]
ATGTCACAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGCGCGCAGCGAATAGCTCGTCTGTTATCCGAAGT
GGATTTCGTCCAATTTTGCCAATATGACAAGCGCCAATTACAACAAATTGGTTGGAACGAGAAACAGATTCAGCGCTGGT
TCAATCCGGAAATGCGTTGGATTGAGAGCGCATTGGCGTGGGCGGAACAACCGAATCAACGTTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATCAGCACCGCACCGCCGGTGTTATTTGTGCGAGGTTCGCTAAGTAGTTTGAG
CTTACCGCAAATTGCGATTGTCGGTAGCCGAGATTTTTCCGCCTACGGAGAATACTGGGCTCACTATTTTAGTGAGCAAT
TGATTAAACATCATTTGGCGGTTACCAGCGGACTCGCAATCGGCATAGACGGTTTTTGCCATCAGCGAGCGGTAGCGGAA
CAGGGTATTACGATTGCTGTGTTGGGTAGCGGTTTAGATCAAGTCTATCCGGCAAGGCACAAAAAATTGGCGGAGCAGAT
TGTCGAATGTGGCGGGGCGTTAGTGTCGGAGTTTTTCCCAAGTCAACCGCCGCTTGCCGAGAATTTTCCTCGTCGTAATC
GGATTATCAGCGGTTTATCGCTTGGCACATTAGTGGTTGAAGCCACGGTGAATAGCGGTTCACTGATTACCGCCCGTTAT
GCGTTGGAGCAAGGGCGAGAAGTTTTTGCGTTACCGAATTCGGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGGTCTTAACCGAAACGATAGAGGATATTTTGCAAGCGATTCAATATCAACTACCGAATCAGCCTCGGC
AACAGGCGCTGTTTGAGCCGGAACAAGCGGTCGAAAAAGCCCCATTTTTTGCAAAAGCTGATGTGCCAAATAAGGTAAAT
CATTTTGCAAAAAAATTGCCGGAAGTGACCGCTTGTCAGCAACAAATTGTGGAACATATCGGTCTTGATCCGATTTCGAT
TGATGATTTAGCGAAAGCGACCACATTGGAGGTGGAAACGCTATTAGTTGAGTTACTGGGTTTGGAATTATTAAGCGTGA
TTAAGCAGGTGAGTGGCGGTTATGTCAGACAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)

DprA winged helix domain (DprA_WH)

(324-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

75.066

99.219

0.745
  dprA Haemophilus influenzae Rd KW20

50.432

90.365

0.456
  dprA Vibrio campbellii strain DS40M4

45.526

98.958

0.451
  dprA Vibrio cholerae strain A1552

42.239

100

0.432
  dprA Legionella pneumophila strain ERS1305867

37.598

99.74

0.375