Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR75_RS09335 Genome accession   NZ_CP103820
Coordinates   1993314..1994468 (+) Length   384 a.a.
NCBI ID   WP_279471696.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3820     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1988314..1999468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR75_RS09300 (NYR75_09305) - 1988872..1989162 (+) 291 WP_039198287.1 putative quinol monooxygenase -
  NYR75_RS09305 (NYR75_09310) - 1989339..1989971 (+) 633 WP_279466437.1 tellurite resistance TerB family protein -
  NYR75_RS09310 (NYR75_09315) - 1990116..1990406 (+) 291 WP_005602339.1 YfcZ/YiiS family protein -
  NYR75_RS09315 (NYR75_09320) - 1990494..1990823 (+) 330 WP_279471694.1 SMR family transporter -
  NYR75_RS09320 (NYR75_09325) - 1990891..1991385 (-) 495 WP_279471695.1 hemerythrin domain-containing protein -
  NYR75_RS09325 (NYR75_09330) rfaD 1991550..1992476 (-) 927 WP_015674211.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR75_RS09330 (NYR75_09335) def 1992617..1993129 (-) 513 WP_039195517.1 peptide deformylase -
  NYR75_RS09335 (NYR75_09340) dprA 1993314..1994468 (+) 1155 WP_279471696.1 DNA-processing protein DprA Machinery gene
  NYR75_RS09340 (NYR75_09345) - 1994513..1996519 (-) 2007 WP_279471697.1 oligopeptide transporter, OPT family -
  NYR75_RS09345 (NYR75_09350) - 1996741..1998102 (-) 1362 WP_279471698.1 PTS ascorbate transporter subunit IIC -
  NYR75_RS09350 (NYR75_09355) - 1998111..1998383 (-) 273 WP_039198279.1 PTS sugar transporter subunit IIB -
  NYR75_RS09355 (NYR75_09360) secE 1998689..1999102 (+) 414 WP_039198278.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42882.18 Da        Isoelectric Point: 5.4369

>NTDB_id=725527 NYR75_RS09335 WP_279471696.1 1993314..1994468(+) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 3820]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESALAWAEQPNQRLLTLFD
EEYPFLLRQISTAPPMLFVRGSLSSLSLPQIAIVGSRDFSAYGEYWAGYFTEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLAEQIVESGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATVNSGSLITARY
ALDQGREVFALPNSVQNPYAQGCHKLIKEGALLTETIEDILQAIQYQLPDQPRQQALFEPPQAVENSQFFAKANVPNRGN
HLAKKLPEMTACQQQIVEHIGLDPISIDDLAKVTSLEVEILLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725527 NYR75_RS09335 WP_279471696.1 1993314..1994468(+) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 3820]
ATGTCACAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGGGCGCAGCGAATAGCTCGCTTGTTATCCGAAGT
GGATTTCGCCCAATTTTGCCAATATGACAAGCGCCAATTACAACAAATCGGTTGGAACGAAAAACAAATTCAGCGCTGGT
TCAATCCGGAAATGCGTTGGATTGAGAGCGCATTGGCGTGGGCGGAACAACCGAATCAACGTTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATCAGCACCGCACCGCCGATGTTATTTGTGCGAGGTTCGCTAAGTAGTTTGAG
CTTACCGCAAATTGCGATTGTCGGTAGCCGAGATTTTTCCGCCTACGGAGAATACTGGGCGGGCTATTTTACCGAGCAAC
TGATTAAACATCATTTGGCGGTAACCAGCGGACTCGCGATTGGTATAGACGGCTTTTGTCATCAGCGAGCGGTAGCGGAA
CAGGGTATTACGATTGCTGTGTTGGGTAGCGGTTTAGATCAAGTCTATCCGGCAAGGCACAAAAAATTGGCGGAACAGAT
TGTTGAAAGCGGCGGGGCGTTAGTGTCGGAATTTTTCCCGAATCAACCGCCGCTTGCCGAGAATTTTCCTCGTCGTAATC
GGATTATCAGCGGTTTATCGCTTGGCACATTAGTGGTTGAAGCTACGGTGAATAGCGGTTCGCTGATTACCGCCCGTTAT
GCGTTGGATCAAGGGCGAGAAGTTTTTGCGCTCCCCAATTCGGTACAAAATCCGTATGCACAAGGTTGCCATAAACTGAT
CAAAGAAGGGGCGCTTTTAACCGAAACGATAGAGGATATTTTGCAAGCGATTCAATATCAACTGCCGGATCAGCCTCGGC
AACAGGCTCTGTTTGAACCGCCCCAAGCGGTTGAAAACTCACAATTTTTTGCAAAAGCCAACGTGCCGAATAGGGGCAAT
CATCTTGCAAAAAAATTGCCGGAAATGACCGCTTGTCAGCAACAAATTGTGGAACATATCGGTCTTGATCCAATTTCGAT
TGATGATTTAGCGAAAGTGACCTCATTGGAAGTGGAAATACTATTAGTCGAGTTACTTGGTTTGGAATTATTAAGTGTAA
TTAAGCAGGTGAGTGGCGGTTATGTCAGACAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-273)

DprA winged helix domain (DprA_WH)

(325-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.753

99.219

0.732
  dprA Haemophilus influenzae Rd KW20

49.568

90.365

0.448
  dprA Vibrio campbellii strain DS40M4

45.263

98.958

0.448
  dprA Vibrio cholerae strain A1552

41.73

100

0.427
  dprA Legionella pneumophila strain ERS1305867

36.815

99.74

0.367