Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR74_RS07055 Genome accession   NZ_CP103819
Coordinates   1534417..1535571 (-) Length   384 a.a.
NCBI ID   WP_279453331.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3873     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1529417..1540571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR74_RS07035 (NYR74_07035) secE 1529790..1530203 (-) 414 WP_279453334.1 preprotein translocase subunit SecE -
  NYR74_RS07040 (NYR74_07040) - 1530509..1530781 (+) 273 WP_039198279.1 PTS sugar transporter subunit IIB -
  NYR74_RS07045 (NYR74_07045) - 1530790..1532145 (+) 1356 WP_279453333.1 PTS ascorbate transporter subunit IIC -
  NYR74_RS07050 (NYR74_07050) - 1532366..1534372 (+) 2007 WP_279453332.1 oligopeptide transporter, OPT family -
  NYR74_RS07055 (NYR74_07055) dprA 1534417..1535571 (-) 1155 WP_279453331.1 DNA-processing protein DprA Machinery gene
  NYR74_RS07060 (NYR74_07060) def 1535756..1536268 (+) 513 WP_039195517.1 peptide deformylase -
  NYR74_RS07065 (NYR74_07065) rfaD 1536408..1537334 (+) 927 WP_015674211.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR74_RS07070 (NYR74_07070) - 1537493..1537987 (+) 495 WP_279453330.1 hemerythrin domain-containing protein -
  NYR74_RS07075 (NYR74_07075) - 1538066..1538395 (-) 330 WP_039198285.1 SMR family transporter -
  NYR74_RS07080 (NYR74_07080) - 1538483..1538773 (-) 291 WP_005602339.1 YfcZ/YiiS family protein -
  NYR74_RS07085 (NYR74_07085) - 1538976..1539284 (+) 309 WP_279437035.1 helix-turn-helix transcriptional regulator -
  NYR74_RS07090 (NYR74_07090) - 1539272..1539589 (+) 318 WP_279444229.1 HipA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 43055.44 Da        Isoelectric Point: 5.8074

>NTDB_id=725493 NYR74_RS07055 WP_279453331.1 1534417..1535571(-) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 3873]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESALAWAEQPNQHLLTLFD
EEYPFLLRQISTAPPVLFVRGSVSSLSLPQVAIVGSRDFSAYGEYWAHYFSEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLAEQIVECGGALVSEFFPSQPPLAENFPRRNRIISGLSLGTLVVEATVNSGSLITARY
ALEQGREVFALPNSVQNPYAEGCHKLIKEGAILTETIEDILQAIQYQLPDQPLQRTLFEPQQAVEKVQFFTKAHIPNRGN
HLAKKLPEMTVCQQQIVEHINLEPISIDDLAKATALEVETLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725493 NYR74_RS07055 WP_279453331.1 1534417..1535571(-) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 3873]
ATGTCACAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGCGCGCAGCGAATAGCTCGTCTGTTATCCGAAGT
GGATTTTGCCCAATTTTGCCAATATGACAAACGCCAATTACAACAAATCGGTTGGAACGAAAAACAAATTCAGCGCTGGT
TCAATCCGGAAATGCGTTGGATTGAGAGTGCATTGGCGTGGGCGGAGCAACCGAATCAACACTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATTAGCACCGCGCCGCCGGTGTTATTTGTGCGAGGCTCGGTAAGCAGTTTGAG
TTTGCCGCAAGTTGCAATTGTTGGTAGTCGAGATTTTTCCGCCTACGGAGAATACTGGGCTCACTATTTTAGTGAGCAAT
TGATTAAACATCATTTGGCGGTTACCAGCGGACTCGCAATCGGCATAGACGGTTTTTGCCATCAGCGAGCGGTGGCGGAA
CAAGGCATTACTATTGCCGTGTTGGGTAGCGGTTTAGATCAAGTGTATCCGGCAAGGCACAAAAAATTGGCGGAGCAGAT
TGTCGAATGTGGCGGGGCGTTAGTGTCGGAGTTTTTCCCAAGTCAACCGCCGCTTGCTGAGAATTTTCCTCGCCGTAATC
GGATTATCAGCGGTTTGTCGCTTGGTACATTAGTGGTGGAAGCTACGGTAAATAGTGGTTCGTTGATTACCGCTCGTTAT
GCGTTGGAACAAGGGCGAGAAGTTTTTGCACTTCCCAATTCGGTACAGAATCCGTATGCGGAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGATTTTAACTGAAACAATAGAGGATATTTTGCAAGCGATTCAATATCAACTGCCGGATCAACCGCTAC
AGAGGACGTTATTTGAACCTCAACAAGCGGTCGAAAAAGTACAATTTTTTACAAAAGCCCATATACCGAATAGGGGTAAT
CATCTTGCAAAAAAATTGCCGGAAATGACCGTTTGTCAGCAACAAATTGTGGAGCATATCAACCTTGAGCCGATTTCGAT
TGATGATTTGGCAAAAGCGACTGCATTGGAAGTGGAAACGCTATTAGTCGAGTTACTGGGTTTGGAATTATTAAGTGTGA
TTAAGCAGGTGAGTGGTGGTTATGTTCGACAATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(326-380)

DNA recombination-mediator protein A (DNA_processg_A)

(69-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

75.066

99.219

0.745
  dprA Haemophilus influenzae Rd KW20

48.857

91.146

0.445
  dprA Vibrio campbellii strain DS40M4

44.855

98.698

0.443
  dprA Vibrio cholerae strain A1552

41.985

100

0.43
  dprA Legionella pneumophila strain ERS1305867

37.337

99.74

0.372