Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR71_RS08645 Genome accession   NZ_CP103817
Coordinates   1903175..1904329 (-) Length   384 a.a.
NCBI ID   WP_279439519.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 4005     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1898175..1909329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR71_RS08625 (NYR71_08625) secE 1898541..1898954 (-) 414 WP_039198278.1 preprotein translocase subunit SecE -
  NYR71_RS08630 (NYR71_08630) - 1899260..1899532 (+) 273 WP_279439516.1 PTS sugar transporter subunit IIB -
  NYR71_RS08635 (NYR71_08635) - 1899541..1900902 (+) 1362 WP_279439517.1 PTS ascorbate transporter subunit IIC -
  NYR71_RS08640 (NYR71_08640) - 1901124..1903130 (+) 2007 WP_279439518.1 oligopeptide transporter, OPT family -
  NYR71_RS08645 (NYR71_08645) dprA 1903175..1904329 (-) 1155 WP_279439519.1 DNA-processing protein DprA Machinery gene
  NYR71_RS08650 (NYR71_08650) def 1904514..1905026 (+) 513 WP_039195517.1 peptide deformylase -
  NYR71_RS08655 (NYR71_08655) rfaD 1905167..1906093 (+) 927 WP_015674211.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR71_RS08660 (NYR71_08660) - 1906258..1906752 (+) 495 WP_279439520.1 hemerythrin domain-containing protein -
  NYR71_RS08665 (NYR71_08665) - 1906831..1907160 (-) 330 WP_039198285.1 SMR family transporter -
  NYR71_RS08670 (NYR71_08670) - 1907248..1907538 (-) 291 WP_279439521.1 YfcZ/YiiS family protein -
  NYR71_RS08675 (NYR71_08675) - 1907692..1908324 (-) 633 WP_279439522.1 tellurite resistance TerB family protein -
  NYR71_RS08680 (NYR71_08680) - 1908501..1908791 (-) 291 WP_039198287.1 putative quinol monooxygenase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42943.14 Da        Isoelectric Point: 5.4330

>NTDB_id=725451 NYR71_RS08645 WP_279439519.1 1903175..1904329(-) (dprA) [Actinobacillus equuli subsp. equuli strain 4005]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESALAWAEQPNQHLLTLFD
EEYPFLLRQISTAPPVLFVRGSLSSLSLPQIAIVGSRDFSAYGEYWAGYFTEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSSLDQVYPARHKKLAEQIVESGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATVNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGALLTETIEDILQAIQYQLPDQPRQQALFEAEQAVEKTQFFAKANVPNRGN
HLAKKLPEMTAYQQQIVEHIGLDPISIDDLAKATTLEVETLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725451 NYR71_RS08645 WP_279439519.1 1903175..1904329(-) (dprA) [Actinobacillus equuli subsp. equuli strain 4005]
ATGTCACAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGGGCGCAGCGAATAGCTCGCTTGTTATCCGAAGT
GGATTTTGCCCAATTTTGCCAATATGACAAACGCCAATTACAACAAATCGGTTGGAACGAAAAACAAATTCAGCGCTGGT
TCAATCCGGAAATGCGTTGGATTGAGAGTGCATTGGCGTGGGCGGAGCAACCGAATCAACACTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATCAGCACCGCACCGCCGGTGTTATTTGTGCGAGGTTCGCTAAGTAGTTTGAG
CTTACCGCAAATTGCGATTGTCGGTAGCCGAGATTTTTCCGCCTACGGAGAATACTGGGCGGGCTATTTTACCGAGCAAC
TGATTAAACATCATTTGGCGGTAACCAGCGGACTCGCGATTGGTATAGACGGCTTTTGTCATCAGCGAGCGGTAGCGGAA
CAGGGTATTACGATTGCTGTGTTGGGTAGCAGTTTAGATCAAGTCTATCCGGCAAGGCACAAAAAATTGGCGGAACAGAT
TGTTGAAAGCGGCGGGGCGTTAGTGTCGGAATTTTTCCCGAATCAACCGCCGCTTGCCGAGAATTTTCCTCGTCGTAATC
GGATTATCAGCGGTTTATCGCTTGGCACATTAGTGGTTGAAGCTACGGTGAATAGCGGTTCGCTGATTACCGCCCGTTAT
GCGTTGGAGCAAGGGCGAGAAGTCTTTGCACTCCCGAATTCTGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGCTTTTAACTGAGACGATAGAGGATATTTTGCAAGCGATTCAATATCAACTGCCGGATCAGCCTCGGC
AACAGGCTCTGTTTGAAGCGGAACAAGCGGTCGAAAAAACACAATTTTTTGCAAAAGCCAACGTGCCGAATAGGGGCAAT
CACCTTGCAAAAAAATTGCCGGAAATGACCGCTTATCAGCAACAAATTGTGGAACATATCGGTCTTGATCCGATTTCGAT
TGATGATTTAGCGAAAGCGACCACATTGGAGGTGGAAACGCTATTAGTTGAGTTACTGGGTTTGGAATTATTAAGTGTGA
TTAAGCAAGTGAGTGGCGGTTATGTCAGACAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-273)

DprA winged helix domain (DprA_WH)

(326-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.016

99.219

0.734
  dprA Haemophilus influenzae Rd KW20

50

90.625

0.453
  dprA Vibrio campbellii strain DS40M4

45.669

99.219

0.453
  dprA Vibrio cholerae strain A1552

41.985

100

0.43
  dprA Legionella pneumophila strain ERS1305867

37.337

99.74

0.372