Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR70_RS08690 Genome accession   NZ_CP103816
Coordinates   1912200..1913354 (-) Length   384 a.a.
NCBI ID   WP_279477081.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 4026     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1907200..1918354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR70_RS08670 (NYR70_08670) secE 1907567..1907980 (-) 414 WP_039198278.1 preprotein translocase subunit SecE -
  NYR70_RS08675 (NYR70_08675) - 1908286..1908558 (+) 273 WP_039198279.1 PTS sugar transporter subunit IIB -
  NYR70_RS08680 (NYR70_08680) - 1908567..1909928 (+) 1362 WP_039198280.1 PTS ascorbate transporter subunit IIC -
  NYR70_RS08685 (NYR70_08685) - 1910149..1912155 (+) 2007 WP_279477079.1 oligopeptide transporter, OPT family -
  NYR70_RS08690 (NYR70_08690) dprA 1912200..1913354 (-) 1155 WP_279477081.1 DNA-processing protein DprA Machinery gene
  NYR70_RS08695 (NYR70_08695) def 1913539..1914051 (+) 513 WP_039195517.1 peptide deformylase -
  NYR70_RS08700 (NYR70_08700) rfaD 1914192..1915118 (+) 927 WP_015674211.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR70_RS08705 (NYR70_08705) - 1915283..1915777 (+) 495 WP_279477082.1 hemerythrin domain-containing protein -
  NYR70_RS08710 (NYR70_08710) - 1915845..1916174 (-) 330 WP_279471694.1 SMR family transporter -
  NYR70_RS08715 (NYR70_08715) - 1916262..1916552 (-) 291 WP_005602339.1 YfcZ/YiiS family protein -
  NYR70_RS08720 (NYR70_08720) - 1916706..1917338 (-) 633 WP_279477083.1 tellurite resistance TerB family protein -
  NYR70_RS08725 (NYR70_08725) - 1917505..1917789 (-) 285 WP_279477084.1 putative quinol monooxygenase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42967.22 Da        Isoelectric Point: 5.6466

>NTDB_id=725424 NYR70_RS08690 WP_279477081.1 1912200..1913354(-) (dprA) [Actinobacillus equuli subsp. equuli strain 4026]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESALAWAEQPNQHLLTLFD
EEYPFLLRQISTAPPVLFVRGSLSSLNLPQIAIVGSRDFSTYGEYWAGYFTEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPVRHKKLAEQIVESSGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATVNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGALLTETIEDILQAIQYQLPDQPRQQALFEAEQAVEKTQFFAKANVPNRGN
HLAKKLPEMTACQQQIVEHIGLNPISIDDLAKATTLEVETLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725424 NYR70_RS08690 WP_279477081.1 1912200..1913354(-) (dprA) [Actinobacillus equuli subsp. equuli strain 4026]
ATGTCACAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGGGCGCAGCGAATAGCTCGCTTGTTATCCGAAGT
GGATTTTGCCCAATTTTGCCAATATGACAAACGCCAATTACAACAAATCGGTTGGAACGAAAAACAAATTCAGCGCTGGT
TCAATCCGGAAATGCGTTGGATTGAGAGTGCATTGGCGTGGGCGGAGCAACCGAATCAACACTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATTAGCACCGCACCGCCGGTATTATTTGTGCGAGGTTCGCTAAGTAGTTTGAA
CTTGCCGCAAATTGCAATTGTCGGTAGCCGAGATTTTTCCACCTATGGAGAATACTGGGCGGGCTATTTTACTGAACAAT
TGATTAAACATCATTTAGCGGTAACCAGTGGATTAGCGATTGGCATAGACGGTTTTTGTCATCAGCGAGCAGTAGCGGAA
CAGGGTATCACCATTGCCGTTTTGGGGAGTGGTTTAGATCAAGTCTATCCGGTAAGGCACAAAAAATTGGCGGAGCAAAT
TGTCGAAAGCAGCGGGGCGTTAGTATCGGAATTTTTTCCGAATCAACCGCCGCTTGCCGAGAATTTTCCTCGTCGTAATC
GGATTATCAGTGGCTTATCACTCGGTACATTAGTGGTGGAAGCCACGGTGAATAGCGGTTCACTGATTACTGCGCGCTAT
GCGTTGGAACAAGGGCGAGAAGTTTTTGCGTTACCGAATTCGGTACAAAATCCGTATGCACAAGGTTGCCATAAACTGAT
CAAAGAAGGGGCGCTTTTAACCGAAACGATAGAGGATATTTTGCAAGCGATTCAATATCAACTGCCGGATCAGCCTCGAC
AACAGGCTCTGTTTGAAGCGGAACAAGCGGTCGAAAAAACACAATTTTTTGCAAAAGCCAACGTGCCGAATAGGGGCAAT
CATCTTGCAAAAAAATTGCCGGAAATGACCGCTTGTCAGCAACAAATTGTGGAACATATCGGTCTTAATCCGATTTCGAT
TGATGATTTAGCGAAAGCGACCACATTGGAGGTGGAAACGCTATTAGTTGAGTTACTGGGTTTGGAATTATTAAGTGTGA
TTAAGCAAGTGAGTGGCGGTTATGTCAGACAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-273)

DprA winged helix domain (DprA_WH)

(325-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.278

99.219

0.737
  dprA Vibrio campbellii strain DS40M4

45.669

99.219

0.453
  dprA Haemophilus influenzae Rd KW20

49.856

90.365

0.451
  dprA Vibrio cholerae strain A1552

42.239

100

0.432
  dprA Legionella pneumophila strain ERS1305867

37.598

99.74

0.375