Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   PY824_RS04230 Genome accession   NZ_CP119172
Coordinates   766324..769956 (+) Length   1210 a.a.
NCBI ID   WP_014294311.1    Uniprot ID   A0A2G3NWQ6
Organism   Streptococcus macedonicus strain SGM CIP105683     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 761324..774956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY824_RS04225 (PY824_04225) rexB 763092..766334 (+) 3243 WP_014294310.1 ATP-dependent nuclease subunit B Machinery gene
  PY824_RS04230 (PY824_04230) rexA 766324..769956 (+) 3633 WP_014294311.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  PY824_RS04235 (PY824_04235) - 770049..771194 (-) 1146 WP_014294312.1 cobalamin-independent methionine synthase II family protein -
  PY824_RS04240 (PY824_04240) - 771402..772136 (+) 735 WP_039670640.1 PHP domain-containing protein -
  PY824_RS04245 (PY824_04245) - 772197..772373 (-) 177 WP_014294314.1 DUF3042 family protein -
  PY824_RS04250 (PY824_04250) miaA 772561..773448 (+) 888 WP_115266056.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  PY824_RS04255 (PY824_04255) hflX 773587..774825 (+) 1239 WP_014294316.1 GTPase HflX -

Sequence


Protein


Download         Length: 1210 a.a.        Molecular weight: 138802.65 Da        Isoelectric Point: 4.9222

>NTDB_id=725418 PY824_RS04230 WP_014294311.1 766324..769956(+) (rexA) [Streptococcus macedonicus strain SGM CIP105683]
MIFKPFLTSEDISSLQIQEAQSSKKQKRTPEQIEAIYSYGNNILVSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFT
VKAAGELKERIEKKISQALQETTDNDLKNYLNEQMLGLQTADIGTMDAFTQKLVNQYGYTLGISPTFRIMTDKSEQDILK
NEVFFDLFSDYMTGSDAELFRQLMRNFSGNRKDSTAFRGIVYKIYDFSQATDNPQKWLAEVFLKGAKTYTDFSAIPDQEV
KDFLTCLHDTADQLQDVTDLEDYKQKTAKGTLTANYKKHLNIIEHLREWAQHFETLYGRDGLGRLATDVAKLLPAGPAVT
VAGTKYPVFKTLQERLTGLKHLETIFKYQPESLPLLELLQKFMQDFSEQYLQAKIQENAFEFSDIAHFAIQILEENADIR
ELYQNKYHEVMVDEYQDNNHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPDHGKLILLKENFR
SQSEVLDATNSIFTHLMDEAVGEILYDDTHQLVAGSPAQKESYPENKTQVLIYDIDNNSDLPSDAEEGQINPNEVKLVAK
EIIRLHNEEHVAFEDITLLVSSRTRNDGILQTFEHYGIPLVTDGGEQNYLKSVEVMVMLDTLRALDNPLNDYALVALMRS
PMFSFNEDELARLALQTTEDDHRANLYQKLEHALAGKGSHNELITIALHDKLADFMACFVAWRDFAKWHALYDLIWKIYN
DRFYYDYVGNLPRAEQRQANLYALALRAHNFERTGFKGLSRFIRMIDKVLESENDLADVEVALPKNAVNLMTIHKSKGLE
FKYVFILNIDKKFSIQDLMSPLILSRQNGAGIKYLADMKEELETDVFPTVKVSMDTLPYQINKRELRLATLSEQMRLFYV
AMTRAEKKLYLIGKASSEKLVDKYSGKSENNHLPVAERENFMTFQDWVLAIHEAYSKETLPFAVDFVTDEDLTDDKIGKI
EATSVITPDDLSDNRQSENITEALDRLEAVEKLNAKYHAAINLPSLRTPSQVKKLYEPVMDTDGVDMMTKPYQAQPTFEL
PDFSKKAKIEATAIGSAMHELMQRIPLSKQVTIADITVALAQVSAEDEVKASIRLENVLAFFENSELGQLIQQHTDKIYR
EAPFAMLKEDPDSKEKFVVRGIVDGYLVLDDRIVLFDYKTDKYKNSEEIKERYQGQMALYAEALSKSYDRKNVDKYLVLL
GGEQLEVVKL

Nucleotide


Download         Length: 3633 bp        

>NTDB_id=725418 PY824_RS04230 WP_014294311.1 766324..769956(+) (rexA) [Streptococcus macedonicus strain SGM CIP105683]
ATGATCTTTAAACCATTTCTAACGTCAGAAGACATTTCTTCTCTACAAATCCAAGAAGCGCAGTCATCCAAAAAACAAAA
ACGTACGCCAGAACAAATCGAAGCTATTTATAGTTATGGCAATAATATTTTGGTGTCTGCATCGGCTGGTTCTGGGAAAA
CCTTTGTCATGGTTGAACGCATTATTGATAAAATTTTGCGTGGTGTGACGATTGACCAGCTATTCATTTCAACCTTCACA
GTCAAGGCTGCTGGGGAATTAAAAGAGCGTATTGAGAAGAAAATTAGCCAAGCTCTGCAAGAAACGACTGACAATGATTT
GAAAAATTATCTCAATGAGCAGATGCTGGGCTTACAGACAGCTGATATTGGAACCATGGATGCTTTTACGCAGAAATTGG
TCAATCAATACGGCTACACGCTAGGAATCTCACCAACTTTTCGTATTATGACGGATAAAAGTGAGCAAGATATTTTGAAA
AATGAAGTCTTTTTTGACCTTTTTTCTGATTACATGACAGGAAGTGATGCTGAGCTTTTTCGTCAATTAATGCGGAATTT
TTCTGGTAATCGTAAGGATAGCACCGCTTTTAGAGGCATTGTTTATAAAATTTATGATTTTAGTCAAGCAACCGATAATC
CACAGAAGTGGTTGGCAGAAGTATTTTTAAAAGGTGCTAAAACTTATACCGATTTTTCAGCAATTCCTGACCAAGAAGTC
AAGGATTTTCTGACTTGCTTGCATGATACGGCTGACCAGTTGCAAGATGTGACTGATTTAGAAGACTACAAGCAAAAAAC
AGCCAAAGGAACACTTACCGCCAATTATAAAAAGCATTTGAATATCATCGAGCATTTGCGTGAATGGGCACAGCATTTTG
AAACTCTTTATGGTCGTGACGGTCTTGGACGTTTGGCGACAGATGTGGCGAAATTGCTTCCAGCTGGTCCTGCTGTGACA
GTTGCAGGAACGAAATATCCCGTCTTTAAAACCTTACAGGAGCGTTTGACTGGTTTGAAACATTTGGAAACCATTTTTAA
ATACCAGCCAGAGAGCCTTCCGTTGCTAGAGCTATTGCAGAAATTTATGCAAGATTTTTCAGAGCAATATTTGCAAGCGA
AAATCCAAGAAAATGCTTTTGAATTTTCGGATATTGCCCATTTTGCCATTCAGATTTTGGAAGAAAACGCTGATATTCGT
GAGCTTTATCAGAATAAGTATCACGAAGTTATGGTCGATGAGTACCAAGATAATAACCACACGCAAGAACGCATGTTGGA
GTTGTTGTCGAATGGTCATAATCGATTTATGGTGGGGGATATCAAGCAATCCATTTACCGCTTCCGTCAAGCCGACCCAC
AGATTTTTAACCAAAAATTTAAAGATTTTCAAGAACATCCTGACCATGGAAAATTAATTTTGTTAAAAGAGAATTTCCGT
AGTCAGTCAGAAGTTTTAGATGCGACAAACAGTATTTTTACGCATTTAATGGACGAAGCTGTTGGTGAGATTTTGTATGA
TGACACACATCAATTGGTCGCTGGAAGCCCTGCTCAAAAGGAAAGTTACCCAGAAAATAAAACGCAAGTGCTTATCTACG
ATATTGATAACAATAGTGACTTGCCAAGTGATGCCGAAGAAGGACAAATTAACCCTAACGAAGTCAAGTTAGTGGCTAAA
GAAATCATTCGTTTGCACAATGAGGAACACGTTGCTTTCGAGGATATTACCTTGTTAGTCTCATCACGCACGCGTAACGA
CGGTATTTTACAAACCTTTGAACACTATGGTATTCCTTTGGTGACTGACGGTGGTGAGCAAAATTACCTTAAATCAGTCG
AAGTCATGGTTATGCTTGACACGCTCCGCGCCCTTGATAATCCGCTCAATGACTATGCCTTAGTAGCGCTCATGCGTTCA
CCGATGTTTTCATTCAATGAAGATGAGCTGGCACGCCTTGCGCTACAAACAACAGAAGATGACCATAGAGCTAATTTGTA
TCAAAAATTAGAGCATGCTTTAGCTGGCAAAGGAAGTCATAATGAATTGATAACAATCGCTTTACATGATAAATTGGCTG
ATTTTATGGCTTGTTTTGTTGCTTGGCGTGACTTTGCCAAATGGCATGCGCTTTATGACTTGATTTGGAAAATTTACAAC
GACAGATTTTACTATGATTACGTGGGCAATTTACCACGTGCTGAGCAACGTCAAGCAAATTTATATGCTTTAGCTCTTCG
TGCCCATAATTTTGAACGAACTGGTTTTAAAGGACTCTCACGTTTTATTCGCATGATTGATAAGGTGTTAGAAAGTGAGA
ATGACCTTGCGGACGTTGAGGTGGCTCTGCCTAAAAATGCGGTGAACTTGATGACTATTCATAAAAGTAAAGGGCTTGAG
TTCAAGTATGTTTTCATTTTGAATATTGACAAGAAATTTAGTATTCAGGATTTGATGTCACCCTTGATTTTATCACGTCA
AAATGGTGCAGGTATCAAGTATCTAGCTGATATGAAAGAAGAGTTGGAAACGGACGTTTTTCCAACAGTCAAGGTTAGCA
TGGATACCTTGCCTTACCAGATCAATAAGCGTGAATTGCGCTTAGCTACGCTTTCAGAACAAATGCGATTGTTTTACGTT
GCCATGACCCGCGCAGAAAAGAAATTGTATTTGATCGGAAAAGCAAGCTCTGAAAAGTTAGTGGATAAATATAGTGGTAA
ATCAGAAAACAATCATTTGCCAGTGGCAGAACGTGAGAATTTCATGACTTTTCAAGATTGGGTATTAGCCATTCATGAAG
CTTATAGCAAGGAGACCTTGCCTTTTGCAGTTGATTTTGTCACGGACGAAGATTTGACAGATGATAAGATTGGTAAAATT
GAAGCCACTTCTGTGATAACGCCAGATGATTTGTCAGATAACCGCCAGTCTGAAAATATCACGGAAGCCTTGGATAGATT
GGAAGCTGTCGAAAAGTTAAATGCGAAGTACCATGCAGCCATCAATTTGCCAAGTTTGAGAACGCCAAGTCAGGTCAAAA
AACTCTATGAGCCAGTCATGGATACTGATGGTGTTGACATGATGACAAAACCCTATCAAGCACAACCAACATTTGAATTG
CCAGATTTTTCGAAGAAAGCCAAAATCGAAGCGACAGCCATTGGTTCGGCAATGCATGAACTTATGCAACGTATTCCTCT
ATCAAAACAGGTGACGATAGCCGATATTACCGTGGCTTTAGCCCAAGTTTCGGCAGAAGATGAGGTGAAAGCAAGTATTC
GTTTGGAAAATGTTCTAGCCTTTTTTGAAAATTCAGAGCTTGGTCAGTTGATTCAGCAACATACAGACAAGATTTATCGC
GAAGCACCTTTTGCCATGTTAAAAGAGGACCCTGACAGTAAGGAAAAATTCGTTGTCCGTGGGATTGTCGATGGTTACCT
TGTCTTAGATGACCGCATCGTACTCTTTGATTACAAGACTGATAAATACAAAAATAGCGAGGAAATCAAGGAACGCTATC
AAGGACAAATGGCTTTATATGCAGAAGCTCTCAGCAAGTCTTATGATAGAAAAAACGTTGATAAATACCTCGTTTTGCTT
GGTGGCGAACAGCTAGAAGTTGTTAAACTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2G3NWQ6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

52.816

100

0.535