Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   PY824_RS03420 Genome accession   NZ_CP119172
Coordinates   612689..613660 (+) Length   323 a.a.
NCBI ID   WP_014294215.1    Uniprot ID   A0A2G3NZ53
Organism   Streptococcus macedonicus strain SGM CIP105683     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 607689..618660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY824_RS03390 (PY824_03390) sodA 607793..608401 (+) 609 WP_014294210.1 superoxide dismutase SodA -
  PY824_RS03395 (PY824_03395) - 608552..609277 (+) 726 WP_014294211.1 YebC/PmpR family DNA-binding transcriptional regulator -
  PY824_RS03400 (PY824_03400) queA 609309..610337 (-) 1029 WP_039670588.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  PY824_RS03405 (PY824_03405) - 610554..611012 (+) 459 WP_223246245.1 VIT1/CCC1 transporter family protein -
  PY824_RS03410 (PY824_03410) nagB 611140..611844 (+) 705 WP_093528074.1 glucosamine-6-phosphate deaminase -
  PY824_RS03415 (PY824_03415) - 611920..612636 (+) 717 WP_093528077.1 pseudouridine synthase -
  PY824_RS03420 (PY824_03420) coiA 612689..613660 (+) 972 WP_014294215.1 competence protein CoiA Machinery gene
  PY824_RS03425 (PY824_03425) pepF 613650..615452 (+) 1803 WP_058621775.1 oligoendopeptidase F Regulator
  PY824_RS03430 (PY824_03430) - 615526..616044 (+) 519 Protein_605 GNAT family N-acetyltransferase -
  PY824_RS03435 (PY824_03435) - 616066..616677 (+) 612 WP_039670591.1 HAD-IA family hydrolase -
  PY824_RS03440 (PY824_03440) - 616731..617432 (+) 702 WP_039670592.1 O-methyltransferase -
  PY824_RS03445 (PY824_03445) - 617502..618524 (+) 1023 WP_039670593.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 38007.33 Da        Isoelectric Point: 7.5223

>NTDB_id=725410 PY824_RS03420 WP_014294215.1 612689..613660(+) (coiA) [Streptococcus macedonicus strain SGM CIP105683]
MLSALDENGKLVSLLDGIPANQNFVCPACRSAVRLKNGKVMRPHFAHVSLNKCDFYSENESSEHLQLKAALYHAVSQTEQ
VVVEKVLPDLHQVADLFVNDNLALEVQCSRLSEQRLFQRTKAYQSHGIQVLWLLGEKLWLGNSLSPLQRHFLYFSQNMGF
HLWELDVTNRLIRLHYLIYEDLHGKVHYLTKTSSFSDDIMAFFRLPYRQQKLSTYEVNQDQTLLTYIQKQLSSRHSIWLK
RQEEAYLQEKNLLSLPLAAYFPQVRPFDFAEGFCQISQDLSPFYENFHRFYQNQTEKERQWLYPPAYYDKMVNKPQKGEC
DVR

Nucleotide


Download         Length: 972 bp        

>NTDB_id=725410 PY824_RS03420 WP_014294215.1 612689..613660(+) (coiA) [Streptococcus macedonicus strain SGM CIP105683]
GTGTTATCAGCGCTTGATGAAAACGGAAAATTAGTATCCTTGTTAGATGGTATACCAGCTAACCAAAACTTTGTTTGCCC
AGCTTGCCGCTCTGCTGTCCGTTTAAAAAATGGCAAAGTTATGCGTCCGCACTTTGCTCATGTTTCTTTGAATAAGTGTG
ATTTTTATAGTGAAAATGAAAGCAGTGAGCACCTTCAGTTAAAAGCGGCGCTTTATCATGCCGTGTCGCAGACTGAACAA
GTCGTGGTTGAAAAAGTTTTACCAGACTTACATCAGGTGGCTGATTTATTTGTCAATGATAATTTGGCTTTAGAAGTGCA
ATGTTCGCGCTTATCAGAACAGCGATTATTTCAACGCACAAAAGCCTATCAAAGTCATGGTATTCAAGTGCTTTGGTTGT
TGGGGGAAAAGTTGTGGCTCGGCAATAGTTTATCACCTTTGCAACGTCATTTTCTTTATTTTTCGCAGAATATGGGCTTT
CATTTGTGGGAGTTGGATGTCACAAATCGGCTCATTCGTTTACATTATTTAATCTATGAAGATTTGCATGGAAAGGTTCA
CTATCTAACCAAGACTAGTTCATTTTCAGATGATATTATGGCATTTTTTCGACTTCCTTATCGGCAGCAGAAGCTTTCAA
CTTACGAGGTAAACCAAGACCAAACCTTATTAACCTATATTCAAAAACAGTTATCTTCTCGCCATTCAATTTGGTTAAAA
AGGCAAGAAGAAGCTTATTTGCAAGAAAAAAATTTGCTAAGTTTGCCTTTAGCGGCTTATTTTCCACAAGTTCGTCCTTT
TGATTTTGCTGAGGGGTTCTGTCAGATTTCCCAAGATTTATCACCGTTTTACGAAAATTTTCATCGCTTTTATCAAAATC
AAACAGAAAAAGAACGTCAATGGCTTTATCCGCCAGCTTATTATGATAAAATGGTAAATAAACCTCAAAAAGGAGAATGT
GATGTCAGATAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(20-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G3NZ53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

47.588

96.285

0.458
  coiA Streptococcus pneumoniae Rx1

46.624

96.285

0.449
  coiA Streptococcus pneumoniae D39

46.624

96.285

0.449
  coiA Streptococcus pneumoniae R6

46.624

96.285

0.449
  coiA Streptococcus pneumoniae TIGR4

46.624

96.285

0.449
  coiA Lactococcus lactis subsp. cremoris KW2

39.692

100

0.399