Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR68_RS09700 Genome accession   NZ_CP103814
Coordinates   2074848..2076002 (+) Length   384 a.a.
NCBI ID   WP_279622223.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 4091     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2069848..2081002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR68_RS09665 (NYR68_09670) - 2070834..2071151 (-) 318 WP_279622220.1 HipA N-terminal domain-containing protein -
  NYR68_RS09670 (NYR68_09675) - 2071139..2071447 (-) 309 WP_279622221.1 helix-turn-helix transcriptional regulator -
  NYR68_RS09675 (NYR68_09680) - 2071650..2071940 (+) 291 WP_279622222.1 YfcZ/YiiS family protein -
  NYR68_RS09680 (NYR68_09685) - 2072028..2072357 (+) 330 WP_279455885.1 SMR family transporter -
  NYR68_RS09685 (NYR68_09690) - 2072425..2072919 (-) 495 WP_279471695.1 hemerythrin domain-containing protein -
  NYR68_RS09690 (NYR68_09695) rfaD 2073084..2074010 (-) 927 WP_015674211.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR68_RS09695 (NYR68_09700) def 2074151..2074663 (-) 513 WP_039195517.1 peptide deformylase -
  NYR68_RS09700 (NYR68_09705) dprA 2074848..2076002 (+) 1155 WP_279622223.1 DNA-processing protein DprA Machinery gene
  NYR68_RS09705 (NYR68_09710) - 2076046..2078052 (-) 2007 WP_279622224.1 oligopeptide transporter, OPT family -
  NYR68_RS09710 (NYR68_09715) - 2078273..2079628 (-) 1356 WP_279622225.1 PTS ascorbate transporter subunit IIC -
  NYR68_RS09715 (NYR68_09720) - 2079637..2079909 (-) 273 WP_039198279.1 PTS sugar transporter subunit IIB -
  NYR68_RS09720 (NYR68_09725) secE 2080215..2080628 (+) 414 WP_039198278.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 43064.40 Da        Isoelectric Point: 5.6490

>NTDB_id=725372 NYR68_RS09700 WP_279622223.1 2074848..2076002(+) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 4091]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEKRWIESALAWAEQPNQHLLTLFD
EEYPFLLRQISTAPPVLFVRGSLSSLNLPQIAIVGSRDFSTYGEYWAGYFTEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPVRHKKLAEQIVESSGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATLNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGAVLTETIEDILQAIQYQLPNQPQQQVLFEAEQAVEKAQFFAKANVLNKVN
HLARKLPELTACQQQIVEHISLEPISIDDLAKATSLEVEMLLVELLSLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725372 NYR68_RS09700 WP_279622223.1 2074848..2076002(+) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 4091]
ATGTCACAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGCGCGCAGCGAATAGCTCGTCTGTTATCCGAAGT
GGATTTCGCCCAATTTTGCCAATATGACAAGCGCCAATTACAACAAATCGGTTGGAACGAAAAACAAATTCAGCGCTGGT
TCAATCCGGAAAAGCGTTGGATTGAGAGTGCATTGGCGTGGGCGGAACAACCGAATCAACACTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATTAGCACCGCACCGCCGGTATTATTTGTGCGAGGTTCGCTAAGTAGTTTGAA
CTTGCCGCAAATTGCAATTGTCGGTAGCCGAGATTTTTCCACCTATGGAGAATACTGGGCGGGCTATTTTACTGAACAAT
TGATTAAACATCATTTAGCGGTAACCAGTGGATTAGCGATTGGCATAGACGGTTTTTGTCATCAGCGAGCAGTAGCGGAA
CAGGGTATCACCATTGCCGTTTTGGGGAGTGGTTTAGATCAAGTCTATCCAGTAAGGCACAAAAAATTGGCGGAGCAAAT
TGTCGAAAGCAGCGGGGCGTTAGTATCGGAATTTTTTCCGAATCAACCGCCGCTTGCCGAGAATTTTCCTCGTCGTAATC
GGATTATCAGCGGTTTATCGCTTGGTACGTTAGTGGTGGAAGCCACATTAAATAGCGGTTCGCTGATTACCGCCCGTTAT
GCGTTGGAGCAAGGGCGAGAAGTTTTTGCGTTACCGAATTCGGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGGTCTTAACCGAAACGATAGAGGATATTTTACAGGCGATTCAATATCAACTGCCGAATCAGCCTCAGC
AACAGGTGCTGTTTGAAGCAGAACAAGCGGTCGAAAAAGCCCAATTTTTTGCAAAAGCCAACGTGCTAAATAAGGTCAAT
CATCTTGCAAGAAAATTGCCGGAATTGACTGCTTGTCAGCAACAAATTGTGGAGCATATCAGCCTTGAGCCGATTTCGAT
TGATGATTTGGCAAAAGCGACTTCATTAGAAGTTGAAATGTTATTAGTCGAGTTACTTAGTTTGGAATTATTGAGCGTGA
TTAAGCAGGTGAGTGGTGGTTATGTTCGACAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)

DprA winged helix domain (DprA_WH)

(324-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.278

99.219

0.737
  dprA Haemophilus influenzae Rd KW20

50.72

90.365

0.458
  dprA Vibrio campbellii strain DS40M4

45.789

98.958

0.453
  dprA Vibrio cholerae strain A1552

42.494

100

0.435
  dprA Legionella pneumophila strain ERS1305867

37.598

99.74

0.375