Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR84_RS09575 Genome accession   NZ_CP103812
Coordinates   2069604..2070758 (+) Length   384 a.a.
NCBI ID   WP_279469851.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3826     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2064604..2075758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR84_RS09540 (NYR84_09540) - 2065586..2065903 (-) 318 WP_279437034.1 HipA N-terminal domain-containing protein -
  NYR84_RS09545 (NYR84_09545) - 2065891..2066199 (-) 309 WP_279437035.1 helix-turn-helix transcriptional regulator -
  NYR84_RS09550 (NYR84_09550) - 2066402..2066692 (+) 291 WP_005602339.1 YfcZ/YiiS family protein -
  NYR84_RS09555 (NYR84_09555) - 2066780..2067109 (+) 330 WP_039198285.1 SMR family transporter -
  NYR84_RS09560 (NYR84_09560) - 2067188..2067682 (-) 495 WP_279469850.1 hemerythrin domain-containing protein -
  NYR84_RS09565 (NYR84_09565) rfaD 2067841..2068767 (-) 927 WP_015674211.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR84_RS09570 (NYR84_09570) def 2068907..2069419 (-) 513 WP_039195517.1 peptide deformylase -
  NYR84_RS09575 (NYR84_09575) dprA 2069604..2070758 (+) 1155 WP_279469851.1 DNA-processing protein DprA Machinery gene
  NYR84_RS09580 (NYR84_09580) - 2070802..2072805 (-) 2004 WP_279469852.1 oligopeptide transporter, OPT family -
  NYR84_RS09585 (NYR84_09585) - 2073026..2074381 (-) 1356 WP_279469853.1 PTS ascorbate transporter subunit IIC -
  NYR84_RS09590 (NYR84_09590) - 2074390..2074662 (-) 273 WP_039198279.1 PTS sugar transporter subunit IIB -
  NYR84_RS09595 (NYR84_09595) secE 2074968..2075381 (+) 414 WP_039198278.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42914.26 Da        Isoelectric Point: 5.6443

>NTDB_id=725319 NYR84_RS09575 WP_279469851.1 2069604..2070758(+) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 3826]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESTLAWAEQPNQHLLTLFD
EEYPFLLRQISTAPPVLFVRGSLSSLSLPQIAIVGSRDFSAYGEYWAGYFTEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLADQIVASGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATVNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGALLTETIEDILQAIQYQLPNQPRQQALFEPEQAVEKAPFFAKADVPNKVN
HFAKKLPEMTACQQQIVEHISLEPISIDDLAKATSLEVEMLLVELLSLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725319 NYR84_RS09575 WP_279469851.1 2069604..2070758(+) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 3826]
ATGTCACAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGGGCGCAGCGAATAGCTCGCTTGTTATCCGAAGT
GGATTTTGCCCAATTTTGCCAATATGACAAACGCCAATTACAACAAATCGGTTGGAACGAAAAACAAATTCAGCGCTGGT
TCAATCCGGAAATGCGTTGGATTGAGAGTACATTGGCGTGGGCGGAGCAACCGAATCAACACTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATCAGCACCGCACCGCCGGTGTTATTTGTGCGAGGTTCGCTAAGTAGTTTGAG
CTTACCGCAAATTGCGATTGTCGGTAGCCGAGATTTTTCCGCCTACGGAGAATACTGGGCGGGCTATTTTACCGAGCAAC
TGATTAAACATCATTTGGCGGTAACCAGCGGACTCGCGATAGGTATAGACGGTTTTTGTCATCAGCGAGCGGTAGCGGAA
CAGGGAATCACTATTGCCGTTTTGGGTAGCGGTTTAGATCAAGTGTATCCGGCAAGGCATAAAAAATTGGCGGATCAGAT
TGTCGCAAGCGGCGGGGCGTTAGTGTCGGAATTTTTCCCGAATCAACCGCCGCTTGCTGAGAATTTTCCTCGTCGTAATC
GGATTATCAGCGGCTTATCACTCGGTACATTAGTGGTGGAAGCCACGGTGAATAGCGGTTCACTGATTACTGCGCGCTAT
GCGTTGGAACAAGGGCGAGAAGTCTTTGCGCTCCCCAATTCGGTACAAAATCCGTATGCACAAGGTTGCCATAAACTGAT
CAAAGAAGGGGCGCTTTTAACCGAAACGATAGAGGATATTTTGCAAGCGATTCAATATCAACTACCGAATCAGCCTCGGC
AACAGGCGCTGTTTGAGCCGGAACAAGCGGTCGAAAAAGCCCCATTTTTTGCAAAAGCTGATGTGCCAAATAAGGTAAAT
CATTTTGCAAAAAAATTGCCGGAAATGACCGCTTGTCAGCAACAAATTGTGGAGCATATCAGCCTTGAGCCGATTTCGAT
TGATGATTTGGCAAAAGCGACTTCATTAGAAGTTGAAATGTTATTAGTCGAGTTACTTAGTTTGGAATTATTGAGCGTGA
TTAAGCAGGTGAGTGGTGGTTATGTTCGACAATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(324-380)

DNA recombination-mediator protein A (DNA_processg_A)

(69-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.541

99.219

0.74
  dprA Vibrio campbellii strain DS40M4

46.316

98.958

0.458
  dprA Haemophilus influenzae Rd KW20

49.138

90.625

0.445
  dprA Vibrio cholerae strain A1552

42.239

100

0.432
  dprA Legionella pneumophila strain ERS1305867

36.815

99.74

0.367