Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NYR84_RS05055 Genome accession   NZ_CP103812
Coordinates   1127373..1128566 (-) Length   397 a.a.
NCBI ID   WP_279439095.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3826     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1122373..1133566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR84_RS05030 (NYR84_05030) lptE 1124165..1124659 (+) 495 WP_278225775.1 LPS assembly lipoprotein LptE -
  NYR84_RS05035 (NYR84_05035) holA 1124767..1125792 (+) 1026 WP_279470418.1 DNA polymerase III subunit delta -
  NYR84_RS05040 (NYR84_05040) yacG 1125869..1126057 (-) 189 WP_115589824.1 DNA gyrase inhibitor YacG -
  NYR84_RS05045 (NYR84_05045) coaE 1126039..1126677 (-) 639 WP_279470419.1 dephospho-CoA kinase -
  NYR84_RS05050 (NYR84_05050) - 1126699..1127373 (-) 675 WP_279470420.1 prepilin peptidase -
  NYR84_RS05055 (NYR84_05055) pilC 1127373..1128566 (-) 1194 WP_279439095.1 type II secretion system F family protein Machinery gene
  NYR84_RS05060 (NYR84_05060) pilB 1128559..1129944 (-) 1386 WP_279439096.1 GspE/PulE family protein Machinery gene
  NYR84_RS05065 (NYR84_05065) pilA 1129965..1130402 (-) 438 WP_279439097.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR84_RS05070 (NYR84_05070) radA 1130583..1131962 (+) 1380 WP_279470421.1 DNA repair protein RadA Machinery gene
  NYR84_RS05075 (NYR84_05075) pepB 1132028..1133311 (+) 1284 WP_279439187.1 aminopeptidase PepB -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 44876.43 Da        Isoelectric Point: 9.6289

>NTDB_id=725305 NYR84_RS05055 WP_279439095.1 1127373..1128566(-) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 3826]
MVSIFEFHWKAKNRFQQKQSGILLAQNHAEAEQKLLAKGYQDIRIQRNFAFARQPKADEITQFIAQLALLINASIPFKQA
LMMQQENCTNIKLYQWLLALNAAVTSGYSFSASLAKLGCYFSKQEIQLIRIGEQSGKLGTVLDNLAKTRSQSEKLTKKVR
KIMFYPLIVLVISCVLTLGLLVFIVPQFADLYMDKAQNLPWLTSLLFSLSAFLRQNGIFLCCSGIVAMGMLLCFAKKFGN
LTACQMRLLSYIPFFNQVIRYTRIIFFTQNLALMLSAHLHLEVALNAFLSEKMHDRLLQQQVQLTLSLLKQGYKFSEGLN
PAVFTSQVVQMIAIGEKSANLAVMCTQISDIYQLKLDYQIDLLSQLLEPILMLLMGIIIGTVLIGLYLPIFDLGVLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=725305 NYR84_RS05055 WP_279439095.1 1127373..1128566(-) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 3826]
ATGGTTAGTATTTTTGAATTTCACTGGAAAGCGAAGAATCGGTTCCAACAAAAACAAAGCGGTATTTTATTAGCCCAAAA
TCATGCTGAGGCAGAGCAAAAGCTCTTGGCAAAAGGCTATCAAGATATTCGTATTCAACGCAATTTTGCTTTTGCTCGAC
AGCCTAAAGCAGATGAAATTACTCAATTTATTGCGCAATTAGCATTATTGATTAACGCTTCCATTCCTTTTAAACAAGCG
TTAATGATGCAGCAGGAAAATTGTACGAATATTAAATTATATCAGTGGCTACTTGCTTTGAATGCTGCTGTGACATCCGG
ATATAGTTTTTCTGCAAGTTTAGCGAAATTAGGGTGTTATTTTTCTAAGCAAGAAATCCAATTAATTCGTATTGGTGAAC
AAAGTGGTAAATTAGGTACTGTTTTGGATAATCTTGCTAAAACACGTAGCCAGTCCGAAAAATTAACGAAAAAAGTTAGA
AAAATTATGTTTTATCCGCTGATTGTGTTAGTCATTTCATGTGTATTGACTCTAGGGCTGTTAGTATTCATTGTGCCTCA
ATTTGCCGACTTATATATGGATAAAGCACAAAATTTACCATGGCTAACGTCATTATTGTTTTCTCTCTCTGCGTTTCTAC
GACAAAATGGGATATTCCTATGCTGTAGCGGTATAGTAGCGATGGGGATGTTGCTCTGTTTTGCAAAAAAATTCGGAAAT
TTGACCGCTTGTCAGATGCGTCTTTTGTCTTATATTCCCTTCTTTAATCAAGTTATTCGCTATACACGAATTATATTCTT
TACTCAGAATTTGGCGTTAATGTTAAGTGCCCATCTGCATTTAGAGGTTGCCCTAAACGCTTTTTTATCTGAGAAAATGC
ACGATCGACTTTTACAACAACAAGTACAGCTTACGTTATCTTTATTAAAACAGGGGTATAAATTTTCGGAAGGATTAAAC
CCGGCTGTATTCACTTCGCAAGTAGTACAAATGATAGCAATAGGGGAGAAAAGTGCTAATTTAGCGGTGATGTGTACGCA
GATTAGCGATATTTATCAGCTGAAATTAGATTATCAAATAGATTTGCTTTCACAATTACTTGAGCCGATTTTAATGTTAC
TTATGGGGATTATTATTGGCACGGTTTTAATTGGGCTTTATTTGCCGATTTTTGACTTAGGGGTTCTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

48.363

100

0.484
  pilC Haemophilus influenzae Rd KW20

39

100

0.393
  pilC Haemophilus influenzae 86-028NP

38.75

100

0.39