Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYR84_RS05070 Genome accession   NZ_CP103812
Coordinates   1130583..1131962 (+) Length   459 a.a.
NCBI ID   WP_279470421.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3826     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1125583..1136962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR84_RS05040 (NYR84_05040) yacG 1125869..1126057 (-) 189 WP_115589824.1 DNA gyrase inhibitor YacG -
  NYR84_RS05045 (NYR84_05045) coaE 1126039..1126677 (-) 639 WP_279470419.1 dephospho-CoA kinase -
  NYR84_RS05050 (NYR84_05050) - 1126699..1127373 (-) 675 WP_279470420.1 prepilin peptidase -
  NYR84_RS05055 (NYR84_05055) pilC 1127373..1128566 (-) 1194 WP_279439095.1 type II secretion system F family protein Machinery gene
  NYR84_RS05060 (NYR84_05060) pilB 1128559..1129944 (-) 1386 WP_279439096.1 GspE/PulE family protein Machinery gene
  NYR84_RS05065 (NYR84_05065) pilA 1129965..1130402 (-) 438 WP_279439097.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR84_RS05070 (NYR84_05070) radA 1130583..1131962 (+) 1380 WP_279470421.1 DNA repair protein RadA Machinery gene
  NYR84_RS05075 (NYR84_05075) pepB 1132028..1133311 (+) 1284 WP_279439187.1 aminopeptidase PepB -
  NYR84_RS05080 (NYR84_05080) - 1133439..1134374 (+) 936 WP_279439099.1 KpsF/GutQ family sugar-phosphate isomerase -
  NYR84_RS05085 (NYR84_05085) greB 1134384..1134872 (+) 489 WP_005611555.1 transcription elongation factor GreB -
  NYR84_RS05090 (NYR84_05090) ribE 1134962..1135423 (-) 462 WP_005600491.1 6,7-dimethyl-8-ribityllumazine synthase -
  NYR84_RS05095 (NYR84_05095) - 1135534..1136739 (-) 1206 WP_039197148.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49712.40 Da        Isoelectric Point: 7.9500

>NTDB_id=725308 NYR84_RS05070 WP_279470421.1 1130583..1131962(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain 3826]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESSKNDRFSGYAGETSSKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFGNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=725308 NYR84_RS05070 WP_279470421.1 1130583..1131962(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain 3826]
ATGGCAAAAGCACCGAAAACGGCTTACGTATGTAATGATTGCGGCGCAGAATATTCTCGCTGGATGGGACAATGCAAAGA
GTGCAAAGCATGGAATACGATTAGTGAAGTTCGCTTAATCTCTAGTAAAGAATCAAGCAAAAATGACCGCTTCAGCGGTT
ATGCCGGAGAAACATCAAGCAAGGTACAAACACTTTCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGTAGTGGGTTT
AATGAGCTTGATCGTGTACTCGGCGGTGGCGTGGTTCCCGGTTCTGCTATTCTTATCGGGGGACATCCTGGTGCAGGAAA
ATCGACACTATTACTGCAAGTGATGTGCGGCTTATCAAAAATGCTACCGACACTCTATGTCACCGGTGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGGCTACCAACTGATAATCTGAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGCAATATTGCCGACCAAGAAAAACCTAAATTAATGGTAATTGACTCTATTCAAGTGATGCATTTATCCGATATTCA
ATCCTCGCCGGGTTCTGTTGCTCAAGTACGAGAATGCGCATCATTTCTTACCCGCTATGCCAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTCACCAAAGACGGTACGCTTGCCGGCCCAAAAGTGTTGGAACACGCTATTGATGCCTCATTA
TTGCTAGAAGGTGAATCTGATTCACGTTTCAGAACATTACGAAGCCAAAAAAACCGATTCGGCGCGGTAAATGAACTTGG
TGTGTTTGCTATGACTGAACAAGGTCTACGAGAAGTTAAAAATCCATCCGCTATTTTTTTAAGCCGTAGTGATGAATTGG
TTTCAGGCAGTTCTGTTATGGTTCTTTGGGAAGGGACTCGCCCGTTATTAGTCGAAATTCAAGCACTCGTTGATCATTCG
ATGCTCGCAAATCCACGCCGTGTGGCGGTCGGTTTAGATCATAATCGCTTATCGCTCTTGCTAGCAGTGCTTCATCGTCA
CGGTGGATTGCAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTCGGCGGCGTAAAAGTTACGGAAACCAGTGCCGATC
TCGCTTTAATTTTGGCTCTGATATCAAGTTTTAGAAATCGTCCGTTGCCACAGGACTTAGTGATCTTTGGTGAAGTAGGG
CTTGCCGGTGAAATCCGTCCGGTACCGAGCGGCCAAGAGCGTATTAGCGAAGCGGCAAAACACGGTTTTAAACGTGCGAT
CGTACCGTTTGGTAATATGCCGAAAAAACCGATAAAAGATATGGAAGTGATTGGGGTTAAAAAATTAAGTGATGCACTAG
ATGCGCTCGGTAATTTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

99.564

0.488
  radA Streptococcus mitis NCTC 12261

44.835

99.129

0.444
  radA Streptococcus pneumoniae Rx1

44.615

99.129

0.442
  radA Streptococcus pneumoniae D39

44.615

99.129

0.442
  radA Streptococcus pneumoniae R6

44.615

99.129

0.442
  radA Streptococcus pneumoniae TIGR4

44.615

99.129

0.442
  radA Streptococcus mitis SK321

44.615

99.129

0.442