Detailed information NTG0725280

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: NYR65_RS05230
• Genome accession: NZ_CP103811
• Coordinates: 1139425..1140618 (-)
• Length: 397 a.a.
• NCBI ID: WP_039197143.1
• Uniprot ID: -
• Organism: Actinobacillus equuli subsp. equuli strain CCUG2041
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1134425..1145618

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR65_RS05205 (NYR65_05205)	lptE	1136217..1136711 (+)	495	WP_005597385.1	LPS assembly lipoprotein LptE	-
NYR65_RS05210 (NYR65_05210)	holA	1136819..1137844 (+)	1026	WP_039197140.1	DNA polymerase III subunit delta	-
NYR65_RS05215 (NYR65_05215)	yacG	1137921..1138109 (-)	189	WP_005623139.1	DNA gyrase inhibitor YacG	-
NYR65_RS05220 (NYR65_05220)	coaE	1138091..1138729 (-)	639	WP_039197141.1	dephospho-CoA kinase	-
NYR65_RS05225 (NYR65_05225)	-	1138751..1139425 (-)	675	WP_039197142.1	fimbrial protein	-
NYR65_RS05230 (NYR65_05230)	pilC	1139425..1140618 (-)	1194	WP_039197143.1	type II secretion system F family protein	Machinery gene
NYR65_RS05235 (NYR65_05235)	-	1140611..1141994 (-)	1384	Protein_1021	GspE/PulE family protein	-
NYR65_RS05240 (NYR65_05240)	pilA	1142015..1142452 (-)	438	WP_039197145.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
NYR65_RS05245 (NYR65_05245)	radA	1142633..1144012 (+)	1380	WP_039197146.1	DNA repair protein RadA	Machinery gene
NYR65_RS05250 (NYR65_05250)	pepB	1144078..1145361 (+)	1284	WP_039199020.1	aminopeptidase PepB	-

Sequence

Protein

• Length: 397 a.a.
• Molecular weight: 44883.42 Da
• Isoelectric Point: 9.7263

>NTDB_id=725280 NYR65_RS05230 WP_039197143.1 1139425..1140618(-) (pilC) [Actinobacillus equuli subsp. equuli strain CCUG2041]
MVSIFEFHWKAKNRFQQKQSGILLAQNHAEAEQKLLAKGYQDIRIQRNFAFARQPKADEITQFIAQLALLINASIPFKQA
LMMQQENCTNIKLYQWLLALNAAVTSGYSFSASLAKLGCYFSKQEIQLIRIGEQSGKLGTVLDNLAKTRSQSEKLTKKVR
KIMFYPLIVLVISCVLTLGLLVFIVPQFADLYMDKAQSLPWLTSLLFSLSAFLRQNGIFLCCSGIVAMGMLFCFAKKFGN
LTACQMRLLSYIPFFNQVIRYIRIIFFTQNLALMLSAHLHLEAALNAFLSEKMHDRLLQQQIRLTLSLLKQGYKFSEGLN
PTVFTSQVVQMIAIGEKSANLAVMCTQISDIYQLKLDYQIDLLSQLLEPVLMLLMGIIIGTVLIGLYLPIFDLGGLV

Nucleotide

• Length: 1194 bp

>NTDB_id=725280 NYR65_RS05230 WP_039197143.1 1139425..1140618(-) (pilC) [Actinobacillus equuli subsp. equuli strain CCUG2041]
ATGGTTAGTATTTTTGAATTTCACTGGAAAGCGAAGAATCGGTTCCAACAAAAACAAAGCGGTATTTTATTAGCCCAAAA
TCATGCTGAGGCAGAGCAAAAGCTCTTGGCAAAAGGCTATCAAGATATTCGTATTCAACGCAATTTTGCTTTTGCTCGAC
AGCCTAAAGCAGATGAAATTACTCAATTTATTGCGCAATTAGCATTATTGATTAACGCTTCCATTCCTTTTAAACAAGCG
TTAATGATGCAGCAGGAAAATTGTACGAATATTAAATTATATCAGTGGCTACTTGCTTTGAATGCTGCTGTGACATCCGG
ATATAGTTTTTCTGCAAGTTTAGCGAAATTAGGGTGTTATTTTTCTAAGCAAGAAATCCAATTAATTCGTATTGGTGAAC
AAAGTGGTAAATTAGGTACTGTTTTGGATAATCTTGCTAAAACACGTAGCCAGTCCGAAAAATTAACGAAAAAAGTTAGA
AAAATTATGTTTTATCCGCTGATTGTGTTAGTCATTTCATGTGTATTGACTCTAGGGCTGTTAGTATTCATTGTGCCTCA
ATTTGCCGACTTATATATGGATAAAGCACAAAGTTTACCATGGCTAACGTCATTATTGTTTTCTCTCTCTGCGTTTCTAC
GACAAAATGGGATATTCCTATGCTGTAGCGGTATAGTAGCGATGGGGATGTTGTTCTGTTTTGCAAAAAAATTCGGAAAT
TTGACCGCTTGTCAGATGCGTCTTTTGTCTTATATTCCCTTCTTTAATCAAGTTATTCGCTATATACGAATTATATTCTT
TACTCAGAATTTGGCGTTAATGTTAAGTGCCCATCTGCATTTAGAGGCTGCCCTAAACGCTTTTTTATCTGAGAAAATGC
ACGATCGACTTTTACAGCAACAAATACGGCTTACATTATCTTTATTAAAACAGGGGTATAAATTTTCGGAAGGATTAAAC
CCGACTGTATTCACTTCTCAAGTAGTACAAATGATAGCAATAGGGGAGAAAAGTGCTAATTTAGCGGTGATGTGTACGCA
GATTAGTGATATTTATCAGCTGAAATTAGATTATCAAATAGATTTGCTTTCACAATTACTTGAGCCGGTTTTAATGCTAC
TTATGGGTATCATTATTGGTACGGTTTTAATTGGGCTTTATTTGCCGATTTTTGACTTAGGGGGTCTCGTATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (63-186)

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	48.615	100	0.486
pilC	Haemophilus influenzae Rd KW20	39	100	0.393
pilC	Haemophilus influenzae 86-028NP	38.75	100	0.39