Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYR65_RS05245 Genome accession   NZ_CP103811
Coordinates   1142633..1144012 (+) Length   459 a.a.
NCBI ID   WP_039197146.1    Uniprot ID   A0AAX3FGV6
Organism   Actinobacillus equuli subsp. equuli strain CCUG2041     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1137633..1149012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR65_RS05215 (NYR65_05215) yacG 1137921..1138109 (-) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  NYR65_RS05220 (NYR65_05220) coaE 1138091..1138729 (-) 639 WP_039197141.1 dephospho-CoA kinase -
  NYR65_RS05225 (NYR65_05225) - 1138751..1139425 (-) 675 WP_039197142.1 fimbrial protein -
  NYR65_RS05230 (NYR65_05230) pilC 1139425..1140618 (-) 1194 WP_039197143.1 type II secretion system F family protein Machinery gene
  NYR65_RS05235 (NYR65_05235) - 1140611..1141994 (-) 1384 Protein_1021 GspE/PulE family protein -
  NYR65_RS05240 (NYR65_05240) pilA 1142015..1142452 (-) 438 WP_039197145.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR65_RS05245 (NYR65_05245) radA 1142633..1144012 (+) 1380 WP_039197146.1 DNA repair protein RadA Machinery gene
  NYR65_RS05250 (NYR65_05250) pepB 1144078..1145361 (+) 1284 WP_039199020.1 aminopeptidase PepB -
  NYR65_RS05255 (NYR65_05255) - 1145489..1146424 (+) 936 WP_039197147.1 KpsF/GutQ family sugar-phosphate isomerase -
  NYR65_RS05260 (NYR65_05260) greB 1146434..1146922 (+) 489 WP_005611555.1 transcription elongation factor GreB -
  NYR65_RS05265 (NYR65_05265) ribE 1147010..1147471 (-) 462 WP_005600491.1 6,7-dimethyl-8-ribityllumazine synthase -
  NYR65_RS05270 (NYR65_05270) - 1147582..1148787 (-) 1206 WP_039197148.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49739.43 Da        Isoelectric Point: 7.9500

>NTDB_id=725282 NYR65_RS05245 WP_039197146.1 1142633..1144012(+) (radA) [Actinobacillus equuli subsp. equuli strain CCUG2041]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESNKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFSNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=725282 NYR65_RS05245 WP_039197146.1 1142633..1144012(+) (radA) [Actinobacillus equuli subsp. equuli strain CCUG2041]
ATGGCAAAAGCACCTAAAACGGCTTACGTATGTAACGATTGCGGCGCAGAATATTCTCGTTGGATGGGACAATGCAAAGA
GTGCAAAGCATGGAATACGATTAGTGAAGTTCGCTTAATCTCTAGTAAAGAATCAAATAAAAACGACCGCTTCAGCGGTT
ATGCCGGAGAGACATCAGGCAAGGTACAAACACTGTCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGCAGTGGGTTT
AATGAGCTTGATCGTGTACTCGGCGGTGGCGTGGTTCCCGGTTCGGCTATTCTCATCGGGGGACATCCTGGTGCAGGAAA
ATCGACACTATTACTGCAAGTGATGTGCGGCTTATCAAAAATGCTACCGACACTCTATGTCACCGGTGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGGCTACCAACTGATAATCTGAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGCAATATTGCCGACCAAGAAAAACCTAAATTAATGGTAATTGACTCTATTCAAGTGATGCATTTATCCGATATTCA
ATCCTCGCCGGGTTCTGTTGCTCAAGTACGAGAATGCGCATCATTTCTTACCCGCTATGCCAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTCACCAAAGACGGTACGCTTGCCGGCCCAAAAGTGTTGGAACATGCTATTGATGCCTCATTA
TTGCTAGAAGGTGAATCTGATTCACGTTTCAGAACATTACGAAGCCAAAAAAACCGATTCGGCGCGGTAAATGAACTTGG
TGTGTTTGCTATGACTGAACAAGGTTTGCGAGAAGTTAAAAATCCATCCGCTATTTTTTTAAGCCGTAGTGATGAATTGG
TTTCAGGCAGTTCTGTTATGGTTCTTTGGGAAGGGACTCGTCCGTTATTAGTTGAAATTCAAGCGCTTGTTGATCATTCA
ATGCTTGCAAATCCACGTCGTGTGGCTGTCGGTTTAGATCATAATCGCTTATCGCTCTTACTTGCTGTACTCCACCGCCA
TGGTGGGCTACAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTCGGGGGCGTAAAAGTAACGGAAACCAGTGCTGATC
TCGCTTTAATTTTGGCACTGATATCAAGTTTTAGAAATCGTCCATTACCACAGGACTTAGTAATTTTTGGTGAAGTAGGG
CTTGCCGGCGAAATTCGTCCGGTGCCGAGTGGTCAAGAACGTATTAGCGAAGCGGCAAAACACGGTTTTAAACGTGCAAT
CGTGCCGTTTAGCAATATGCCGAAAAAACCGATAAAAGATATGGAAGTGATTGGGGTTAAAAAATTAAGTGATGCGCTAG
ATGCACTTGGTAATTTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-224)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

99.564

0.49
  radA Streptococcus mitis NCTC 12261

44.835

99.129

0.444
  radA Streptococcus pneumoniae Rx1

44.615

99.129

0.442
  radA Streptococcus pneumoniae D39

44.615

99.129

0.442
  radA Streptococcus pneumoniae R6

44.615

99.129

0.442
  radA Streptococcus pneumoniae TIGR4

44.615

99.129

0.442
  radA Streptococcus mitis SK321

44.615

99.129

0.442