Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR62_RS08895 Genome accession   NZ_CP103809
Coordinates   1932048..1933202 (+) Length   384 a.a.
NCBI ID   WP_279475400.1    Uniprot ID   -
Organism   Actinobacillus genomosp. 1 strain CCUG22229     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1927048..1938202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR62_RS08870 (NYR62_08870) - 1927542..1928255 (+) 714 WP_279457247.1 L-ribulose-5-phosphate 4-epimerase -
  NYR62_RS08875 (NYR62_08875) - 1928422..1929051 (-) 630 WP_279457248.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  NYR62_RS08880 (NYR62_08880) - 1929378..1930115 (+) 738 WP_279457249.1 hypothetical protein -
  NYR62_RS08885 (NYR62_08885) rfaD 1930284..1931210 (-) 927 WP_115590917.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR62_RS08890 (NYR62_08890) def 1931350..1931862 (-) 513 WP_039195517.1 peptide deformylase -
  NYR62_RS08895 (NYR62_08895) dprA 1932048..1933202 (+) 1155 WP_279475400.1 DNA-processing protein DprA Machinery gene
  NYR62_RS08900 (NYR62_08900) - 1933246..1935252 (-) 2007 WP_279475402.1 oligopeptide transporter, OPT family -
  NYR62_RS08905 (NYR62_08905) - 1935472..1936827 (-) 1356 WP_279468579.1 PTS ascorbate transporter subunit IIC -
  NYR62_RS08910 (NYR62_08910) - 1936836..1937108 (-) 273 WP_279475403.1 PTS sugar transporter subunit IIB -
  NYR62_RS08915 (NYR62_08915) secE 1937413..1937826 (+) 414 WP_279457255.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 43017.35 Da        Isoelectric Point: 5.0139

>NTDB_id=725238 NYR62_RS08895 WP_279475400.1 1932048..1933202(+) (dprA) [Actinobacillus genomosp. 1 strain CCUG22229]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFTQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIDDALTWAEQPNQHLLSLFD
EEYPFLLRQISTAPPVLFVRGSLSSLSLPQIAIVGSRDFSAYGEYWAGYFAEQLVKHRMAVTSGLAIGIDGFCHQRAVEE
QGITIAVLGSGLEQVYPARHKKLAEQIVESGGSLVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATLNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGAVLTETIEDILQAIQYQLPDQPQQQVLFEPQQAVEKAPFFAKADVPNKVN
HLAKKLPEMTACQQQIVEHISLEPISIDDLAKATALEVEMLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725238 NYR62_RS08895 WP_279475400.1 1932048..1933202(+) (dprA) [Actinobacillus genomosp. 1 strain CCUG22229]
ATGTCTCAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGGGCGCAGCGCATTGCTCGTCTGTTATCCGAAGT
GGATTTCACCCAATTTTGCCAATATGACAAACGCCAATTACAACAAATCGGTTGGAACGAAAAACAAATTCAGCGCTGGT
TCAATCCGGAAATGCGTTGGATTGATGATGCACTCACTTGGGCAGAGCAGCCGAATCAACACTTATTGAGCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATCAGCACCGCACCGCCGGTGTTATTTGTGCGAGGTTCGCTAAGTAGTTTGAG
CTTGCCGCAAATTGCAATTGTCGGTAGCCGAGATTTTTCTGCCTACGGAGAATACTGGGCGGGCTATTTTGCCGAGCAAC
TGGTTAAACATCGTATGGCGGTTACTAGCGGACTTGCAATCGGCATAGACGGTTTTTGCCATCAGCGAGCGGTAGAGGAA
CAGGGTATTACCATTGCTGTGTTGGGCAGCGGTTTAGAGCAAGTGTATCCGGCAAGACATAAAAAACTGGCGGAACAGAT
TGTTGAAAGCGGTGGGTCGTTAGTGTCGGAATTTTTCCCGAATCAACCGCCGCTTGCCGAGAATTTCCCGCGTCGTAATC
GCATTATCAGCGGTTTGTCACTCGGTACATTAGTGGTGGAAGCCACATTAAATAGCGGCTCGCTGATTACCGCCCGTTAT
GCGTTGGAGCAAGGACGAGAAGTTTTTGCGTTACCGAATTCGGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGGTCTTAACTGAAACGATAGAGGATATTTTACAAGCGATTCAATATCAACTGCCGGATCAGCCTCAGC
AACAGGTGCTGTTTGAGCCGCAACAAGCGGTCGAAAAAGCCCCATTTTTTGCAAAAGCTGATGTGCCGAATAAGGTCAAT
CATCTTGCAAAAAAATTGCCGGAAATGACCGCTTGTCAGCAACAAATTGTGGAACATATCAGTCTTGAACCGATTTCGAT
TGACGATTTGGCGAAAGCGACCGCATTGGAAGTGGAAATGCTATTAGTCGAGTTATTGGGTTTGGAATTATTAAGTGTGA
TTAAGCAAGTGAGCGGCGGTTATGTCAGGCAATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(325-380)

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.278

99.219

0.737
  dprA Haemophilus influenzae Rd KW20

51.297

90.365

0.464
  dprA Vibrio campbellii strain DS40M4

46.316

98.958

0.458
  dprA Vibrio cholerae strain A1552

41.221

100

0.422
  dprA Legionella pneumophila strain ERS1305867

37.076

99.74

0.37