Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR61_RS09300 Genome accession   NZ_CP103808
Coordinates   1989271..1990425 (+) Length   384 a.a.
NCBI ID   WP_279468577.1    Uniprot ID   -
Organism   Actinobacillus genomosp. 1 strain CCUG22231     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1984271..1995425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR61_RS09275 (NYR61_09275) araD 1984769..1985482 (+) 714 WP_279468574.1 L-ribulose-5-phosphate 4-epimerase -
  NYR61_RS09280 (NYR61_09280) - 1985649..1986278 (-) 630 WP_279457248.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  NYR61_RS09285 (NYR61_09285) - 1986605..1987342 (+) 738 WP_279457249.1 hypothetical protein -
  NYR61_RS09290 (NYR61_09290) rfaD 1987507..1988433 (-) 927 WP_115590917.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR61_RS09295 (NYR61_09295) def 1988573..1989085 (-) 513 WP_279468576.1 peptide deformylase -
  NYR61_RS09300 (NYR61_09300) dprA 1989271..1990425 (+) 1155 WP_279468577.1 DNA-processing protein DprA Machinery gene
  NYR61_RS09305 (NYR61_09305) - 1990469..1992475 (-) 2007 WP_279468578.1 oligopeptide transporter, OPT family -
  NYR61_RS09310 (NYR61_09310) - 1992696..1994051 (-) 1356 WP_279468579.1 PTS ascorbate transporter subunit IIC -
  NYR61_RS09315 (NYR61_09315) - 1994060..1994332 (-) 273 WP_279457254.1 PTS sugar transporter subunit IIB -
  NYR61_RS09320 (NYR61_09320) secE 1994636..1995050 (+) 415 Protein_1793 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42917.36 Da        Isoelectric Point: 5.1306

>NTDB_id=725212 NYR61_RS09300 WP_279468577.1 1989271..1990425(+) (dprA) [Actinobacillus genomosp. 1 strain CCUG22231]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESALTWAEQPNQHLLSLFD
EEYPFLLRQISTAPPVLFVRGSLSSLSLPQIAIVGSRDFSAYGEYWAGYFAEQLVKHRMAVTSGLAIGIDGFCHQRAVEE
QGITIAVLGSGLDQVYPARHKKLAEQIVESGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATLNSGSLITARY
ALEQGREVFALPNAVQNPYAQGCHKLIKEGAVLTETIEDILQAIQYQLPDQPRQQVLFEPEQAVEKAPFFAKVDMPNKVN
HLAKKLPELTACQQQIVANISLEPISIDDLAKATALEVEMLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725212 NYR61_RS09300 WP_279468577.1 1989271..1990425(+) (dprA) [Actinobacillus genomosp. 1 strain CCUG22231]
ATGTCTCAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGCGCACAGCGCATTGCTCGTCTGTTATCCGAAGT
GGATTTCGCCCAATTTTGCCAATATGACAAACGCCAATTACAACAAATCGGTTGGAACGAGAAACAGATTCAACGCTGGT
TTAATCCGGAAATGCGTTGGATTGAGAGTGCTCTCACGTGGGCGGAGCAGCCGAATCAACACTTATTGAGCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATCAGCACCGCACCGCCGGTGTTATTTGTGCGAGGTTCGCTAAGCAGTTTGAG
CTTGCCGCAAATTGCAATTGTCGGTAGCCGAGATTTTTCTGCCTACGGAGAATACTGGGCGGGCTATTTTGCCGAGCAAC
TGGTTAAACATCGTATGGCGGTTACTAGCGGACTTGCAATCGGCATAGACGGTTTTTGCCATCAGCGAGCGGTAGAGGAA
CAGGGTATTACCATTGCTGTGTTGGGCAGCGGTTTAGATCAAGTGTATCCGGCAAGACACAAAAAATTGGCGGAACAGAT
TGTTGAAAGCGGCGGGGCGTTAGTGTCGGAATTTTTTCCGAATCAACCGCCGCTTGCCGAGAATTTCCCGCGTCGTAATC
GGATTATCAGCGGTTTGTCACTCGGTACATTAGTGGTGGAAGCCACGCTAAATAGCGGCTCGCTGATTACCGCACGTTAT
GCGTTGGAACAAGGGCGAGAAGTTTTTGCGCTCCCCAATGCGGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGGTCTTAACCGAAACGATAGAGGATATTTTGCAAGCGATTCAATATCAACTGCCGGATCAGCCTCGGC
AACAGGTGTTGTTTGAGCCGGAACAAGCGGTCGAAAAAGCCCCATTTTTTGCAAAAGTCGATATGCCGAATAAGGTCAAT
CATCTTGCAAAAAAATTGCCGGAATTGACCGCTTGTCAGCAACAAATTGTGGCGAATATTAGTCTTGAGCCGATTTCGAT
TGACGATTTAGCTAAGGCGACCGCATTGGAAGTGGAAATGCTATTAGTCGAGTTATTGGGTTTGGAATTATTAAGTGTGA
TTAAGCAAGTGAGCGGCGGTTATGTCAGGCAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)

DprA winged helix domain (DprA_WH)

(325-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.278

99.219

0.737
  dprA Vibrio campbellii strain DS40M4

46.316

98.958

0.458
  dprA Haemophilus influenzae Rd KW20

49.856

90.365

0.451
  dprA Vibrio cholerae strain A1552

42.239

100

0.432
  dprA Legionella pneumophila strain ERS1305867

37.337

99.74

0.372