Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR61_RS07955 Genome accession   NZ_CP103808
Coordinates   1719365..1719709 (+) Length   114 a.a.
NCBI ID   WP_279457035.1    Uniprot ID   -
Organism   Actinobacillus genomosp. 1 strain CCUG22231     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1714365..1724709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR61_RS07930 (NYR61_07930) rpsL 1714475..1714849 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  NYR61_RS07935 (NYR61_07935) rfaC 1714970..1715929 (-) 960 WP_279468387.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR61_RS07940 (NYR61_07940) waaF 1716004..1717041 (-) 1038 WP_279468389.1 lipopolysaccharide heptosyltransferase II -
  NYR61_RS07945 (NYR61_07945) - 1717123..1717527 (-) 405 WP_279468402.1 GlcNAc transferase -
  NYR61_RS07950 (NYR61_07950) - 1717649..1719058 (-) 1410 WP_279468403.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR61_RS07955 (NYR61_07955) comEA/comE1 1719365..1719709 (+) 345 WP_279457035.1 ComEA family DNA-binding protein Machinery gene
  NYR61_RS07960 (NYR61_07960) asd 1719859..1720749 (+) 891 WP_279468404.1 archaetidylserine decarboxylase -
  NYR61_RS07965 (NYR61_07965) - 1720866..1723229 (+) 2364 WP_279468405.1 DEAD/DEAH box helicase family protein -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12285.24 Da        Isoelectric Point: 10.2040

>NTDB_id=725208 NYR61_RS07955 WP_279457035.1 1719365..1719709(+) (comEA/comE1) [Actinobacillus genomosp. 1 strain CCUG22231]
MKKLTTLSISFMIALLSGNTIAKPNQVSASEPTPVIQQATMTGKAVEKQNQVNINTADAAEIKAKLVGIGEKKAQAIVDY
RTKNGSFITIEQLTEVSGIGKATLEKNRERIVLE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=725208 NYR61_RS07955 WP_279457035.1 1719365..1719709(+) (comEA/comE1) [Actinobacillus genomosp. 1 strain CCUG22231]
ATGAAAAAACTTACCACACTTAGCATTAGCTTCATGATTGCTCTGCTATCCGGCAATACGATAGCTAAACCAAATCAAGT
ATCCGCATCGGAACCTACACCTGTTATTCAACAAGCGACTATGACGGGAAAAGCTGTCGAGAAACAGAATCAAGTTAATA
TCAATACGGCTGATGCGGCGGAAATAAAAGCGAAACTAGTCGGCATCGGCGAGAAAAAAGCACAAGCGATAGTCGATTAT
CGCACCAAAAACGGTTCTTTTATTACTATAGAGCAACTTACCGAAGTATCCGGTATCGGTAAAGCAACGCTAGAGAAAAA
TCGTGAACGCATTGTACTAGAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.018

100

0.57
  comE1/comEA Haemophilus influenzae Rd KW20

46.018

99.123

0.456
  comEA Vibrio cholerae C6706

48.913

80.702

0.395
  comEA Vibrio cholerae strain A1552

48.913

80.702

0.395