Detailed information NTG0725082

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NYS59_RS24410
• Genome accession: NZ_CP103789
• Coordinates: 5239218..5240090 (+)
• Length: 290 a.a.
• NCBI ID: WP_128652216.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain 2718
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5234218..5245090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYS59_RS24390	-	5235106..5235513 (-)	408	WP_316927926.1	hypothetical protein	-
NYS59_RS24395	-	5235601..5236065 (-)	465	WP_058156624.1	pilin	-
NYS59_RS24400	pilB	5236296..5237996 (+)	1701	WP_033956582.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NYS59_RS24405	pilC	5238000..5239217 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
NYS59_RS24410	pilD	5239218..5240090 (+)	873	WP_128652216.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
NYS59_RS24415	coaE	5240087..5240698 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
NYS59_RS24420	yacG	5240695..5240895 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
NYS59_RS24425	-	5240932..5241141 (-)	210	WP_003094660.1	hypothetical protein	-
NYS59_RS24430	-	5241247..5241936 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
NYS59_RS24435	-	5241933..5242403 (-)	471	WP_003094664.1	hypothetical protein	-
NYS59_RS24440	-	5242400..5242825 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
NYS59_RS24445	-	5242958..5243587 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
NYS59_RS24450	-	5243584..5244033 (+)	450	WP_023126574.1	MOSC domain-containing protein	-
NYS59_RS24455	-	5244059..5244229 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31854.86 Da
• Isoelectric Point: 7.3860

>NTDB_id=725082 NYS59_RS24410 WP_128652216.1 5239218..5240090(+) (pilD) [Pseudomonas aeruginosa strain 2718]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPHCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVTWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=725082 NYS59_RS24410 WP_128652216.1 5239218..5240090(+) (pilD) [Pseudomonas aeruginosa strain 2718]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCACTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCACCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTACCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469