Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NYR91_RS12275 Genome accession   NZ_CP103784
Coordinates   2400920..2401255 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain RO-NN-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2395920..2406255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS12255 (NYR91_12255) gcvT 2396511..2397599 (-) 1089 WP_014477320.1 glycine cleavage system aminomethyltransferase GcvT -
  NYR91_RS12260 (NYR91_12260) hepAA 2398041..2399714 (+) 1674 WP_014477321.1 DEAD/DEAH box helicase -
  NYR91_RS12265 (NYR91_12265) yqhG 2399735..2400529 (+) 795 WP_014477322.1 YqhG family protein -
  NYR91_RS12270 (NYR91_12270) sinI 2400713..2400886 (+) 174 WP_014477323.1 anti-repressor SinI Regulator
  NYR91_RS12275 (NYR91_12275) sinR 2400920..2401255 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NYR91_RS12280 (NYR91_12280) tasA 2401347..2402132 (-) 786 WP_014477324.1 biofilm matrix protein TasA -
  NYR91_RS12285 (NYR91_12285) sipW 2402197..2402769 (-) 573 WP_014477325.1 signal peptidase I SipW -
  NYR91_RS12290 (NYR91_12290) tapA 2402753..2403514 (-) 762 WP_014477326.1 amyloid fiber anchoring/assembly protein TapA -
  NYR91_RS12295 (NYR91_12295) yqzG 2403788..2404114 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NYR91_RS12300 (NYR91_12300) spoIITA 2404156..2404335 (-) 180 WP_014477327.1 YqzE family protein -
  NYR91_RS12305 (NYR91_12305) comGG 2404407..2404781 (-) 375 WP_014477328.1 ComG operon protein ComGG Machinery gene
  NYR91_RS12310 (NYR91_12310) comGF 2404782..2405165 (-) 384 WP_041519396.1 ComG operon protein ComGF Machinery gene
  NYR91_RS12315 (NYR91_12315) comGE 2405191..2405538 (-) 348 WP_014477330.1 ComG operon protein 5 Machinery gene
  NYR91_RS12320 (NYR91_12320) comGD 2405522..2405953 (-) 432 WP_014477331.1 comG operon protein ComGD Machinery gene
  NYR91_RS12325 (NYR91_12325) comGC 2405943..2406239 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=725018 NYR91_RS12275 WP_003226345.1 2400920..2401255(+) (sinR) [Bacillus subtilis strain RO-NN-1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=725018 NYR91_RS12275 WP_003226345.1 2400920..2401255(+) (sinR) [Bacillus subtilis strain RO-NN-1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1