Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NYR48_RS19720 Genome accession   NZ_CP103782
Coordinates   3993220..3993738 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain DA4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3988220..3998738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS19690 - 3989416..3989796 (-) 381 WP_039253120.1 VOC family protein -
  NYR48_RS19695 - 3989853..3990791 (-) 939 WP_012118935.1 LacI family DNA-binding transcriptional regulator -
  NYR48_RS19700 xth 3990854..3991612 (-) 759 WP_259424847.1 exodeoxyribonuclease III -
  NYR48_RS19705 - 3991609..3992166 (-) 558 WP_259424848.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  NYR48_RS19710 - 3992163..3992744 (-) 582 WP_053573837.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  NYR48_RS19715 rpsR 3992937..3993176 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  NYR48_RS19720 ssbA 3993220..3993738 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  NYR48_RS19725 rpsF 3993778..3994065 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  NYR48_RS19730 ychF 3994177..3995277 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  NYR48_RS19735 - 3995404..3997407 (-) 2004 WP_259424849.1 molybdopterin-dependent oxidoreductase -
  NYR48_RS19740 - 3997454..3997660 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=724890 NYR48_RS19720 WP_004392979.1 3993220..3993738(-) (ssbA) [Bacillus velezensis strain DA4]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=724890 NYR48_RS19720 WP_004392979.1 3993220..3993738(-) (ssbA) [Bacillus velezensis strain DA4]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378