Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NYR47_RS27715 Genome accession   NZ_CP103777
Coordinates   5376489..5377010 (-) Length   173 a.a.
NCBI ID   WP_000981965.1    Uniprot ID   A0A8I1GPV4
Organism   Bacillus toyonensis strain DC11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5371489..5382010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR47_RS27695 rplI 5372700..5373146 (-) 447 WP_000864222.1 50S ribosomal protein L9 -
  NYR47_RS27700 - 5373143..5375116 (-) 1974 WP_259416608.1 DHH family phosphoesterase -
  NYR47_RS27705 - 5375195..5376130 (-) 936 WP_259416609.1 YybS family protein -
  NYR47_RS27710 rpsR 5376211..5376444 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  NYR47_RS27715 ssbA 5376489..5377010 (-) 522 WP_000981965.1 single-stranded DNA-binding protein Machinery gene
  NYR47_RS27720 rpsF 5377037..5377327 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  NYR47_RS27725 ychF 5377519..5378619 (-) 1101 WP_000524664.1 redox-regulated ATPase YchF -
  NYR47_RS27730 - 5378734..5378931 (-) 198 WP_000435485.1 DUF951 domain-containing protein -
  NYR47_RS27735 - 5378952..5379833 (-) 882 WP_000365116.1 mechanosensitive ion channel family protein -
  NYR47_RS27740 yyaC 5380093..5380689 (+) 597 WP_001020736.1 spore protease YyaC -
  NYR47_RS27745 spo0J 5380710..5381561 (-) 852 WP_001051819.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18741.50 Da        Isoelectric Point: 4.9222

>NTDB_id=724814 NYR47_RS27715 WP_000981965.1 5376489..5377010(-) (ssbA) [Bacillus toyonensis strain DC11]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNSGNTGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=724814 NYR47_RS27715 WP_000981965.1 5376489..5377010(-) (ssbA) [Bacillus toyonensis strain DC11]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACTCAGGTAACACTGGAAACTCTGGATTTACGAAGAATGACGATCCATTTTCGAATGTT
GGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.886

100

0.711
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

35.165

100

0.37