Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NYR93_RS17655 Genome accession   NZ_CP103769
Coordinates   3644228..3645613 (+) Length   461 a.a.
NCBI ID   WP_024085865.1    Uniprot ID   -
Organism   Bacillus velezensis strain ML61     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3639228..3650613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR93_RS17635 (NYR93_17640) - 3640375..3641022 (-) 648 WP_003151384.1 YigZ family protein -
  NYR93_RS17640 (NYR93_17645) degS 3641245..3642408 (+) 1164 WP_264254775.1 two-component sensor histidine kinase DegS Regulator
  NYR93_RS17645 (NYR93_17650) degU 3642485..3643174 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYR93_RS17650 (NYR93_17655) - 3643272..3644120 (+) 849 WP_024085866.1 DegV family protein -
  NYR93_RS17655 (NYR93_17660) comFA 3644228..3645613 (+) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  NYR93_RS17660 (NYR93_17665) - 3645671..3645955 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  NYR93_RS17665 (NYR93_17670) comFC 3645961..3646650 (+) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  NYR93_RS17670 (NYR93_17675) - 3646724..3647143 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  NYR93_RS17675 (NYR93_17680) flgM 3647213..3647479 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYR93_RS17680 (NYR93_17685) - 3647494..3647976 (+) 483 WP_024085863.1 flagellar protein FlgN -
  NYR93_RS17685 (NYR93_17690) flgK 3647992..3649509 (+) 1518 WP_024085862.1 flagellar hook-associated protein FlgK -
  NYR93_RS17690 (NYR93_17695) flgL 3649521..3650438 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52491.85 Da        Isoelectric Point: 10.1310

>NTDB_id=724664 NYR93_RS17655 WP_024085865.1 3644228..3645613(+) (comFA) [Bacillus velezensis strain ML61]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINRFIEKEHITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGMTNGMKKAKKHIELMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=724664 NYR93_RS17655 WP_024085865.1 3644228..3645613(+) (comFA) [Bacillus velezensis strain ML61]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACCGTTTTATAGAAAAAGAGCATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATCTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACTTATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627