Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NYR93_RS17645 Genome accession   NZ_CP103769
Coordinates   3642485..3643174 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain ML61     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3637485..3648174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR93_RS17625 (NYR93_17630) - 3637990..3639066 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  NYR93_RS17630 (NYR93_17635) - 3639156..3640370 (-) 1215 WP_024085868.1 LCP family protein -
  NYR93_RS17635 (NYR93_17640) - 3640375..3641022 (-) 648 WP_003151384.1 YigZ family protein -
  NYR93_RS17640 (NYR93_17645) degS 3641245..3642408 (+) 1164 WP_264254775.1 two-component sensor histidine kinase DegS Regulator
  NYR93_RS17645 (NYR93_17650) degU 3642485..3643174 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYR93_RS17650 (NYR93_17655) - 3643272..3644120 (+) 849 WP_024085866.1 DegV family protein -
  NYR93_RS17655 (NYR93_17660) comFA 3644228..3645613 (+) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  NYR93_RS17660 (NYR93_17665) - 3645671..3645955 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  NYR93_RS17665 (NYR93_17670) comFC 3645961..3646650 (+) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  NYR93_RS17670 (NYR93_17675) - 3646724..3647143 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  NYR93_RS17675 (NYR93_17680) flgM 3647213..3647479 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYR93_RS17680 (NYR93_17685) - 3647494..3647976 (+) 483 WP_024085863.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=724663 NYR93_RS17645 WP_003219701.1 3642485..3643174(+) (degU) [Bacillus velezensis strain ML61]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=724663 NYR93_RS17645 WP_003219701.1 3642485..3643174(+) (degU) [Bacillus velezensis strain ML61]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1