Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NYR93_RS17665 Genome accession   NZ_CP103769
Coordinates   3645961..3646650 (+) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain ML61     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3640961..3651650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR93_RS17640 (NYR93_17645) degS 3641245..3642408 (+) 1164 WP_264254775.1 two-component sensor histidine kinase DegS Regulator
  NYR93_RS17645 (NYR93_17650) degU 3642485..3643174 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYR93_RS17650 (NYR93_17655) - 3643272..3644120 (+) 849 WP_024085866.1 DegV family protein -
  NYR93_RS17655 (NYR93_17660) comFA 3644228..3645613 (+) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  NYR93_RS17660 (NYR93_17665) - 3645671..3645955 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  NYR93_RS17665 (NYR93_17670) comFC 3645961..3646650 (+) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  NYR93_RS17670 (NYR93_17675) - 3646724..3647143 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  NYR93_RS17675 (NYR93_17680) flgM 3647213..3647479 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYR93_RS17680 (NYR93_17685) - 3647494..3647976 (+) 483 WP_024085863.1 flagellar protein FlgN -
  NYR93_RS17685 (NYR93_17690) flgK 3647992..3649509 (+) 1518 WP_024085862.1 flagellar hook-associated protein FlgK -
  NYR93_RS17690 (NYR93_17695) flgL 3649521..3650438 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  NYR93_RS17695 (NYR93_17700) - 3650529..3651098 (+) 570 WP_024085861.1 DUF6470 family protein -
  NYR93_RS17700 (NYR93_17705) fliW 3651128..3651559 (+) 432 WP_003151399.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=724665 NYR93_RS17665 WP_196616643.1 3645961..3646650(+) (comFC) [Bacillus velezensis strain ML61]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=724665 NYR93_RS17665 WP_196616643.1 3645961..3646650(+) (comFC) [Bacillus velezensis strain ML61]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGTAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGTTTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603